Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h04r
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical ...    76   3e-14
Z77653-3|CAB01126.1|  462|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z75551-5|CAA99935.1|  462|Caenorhabditis elegans Hypothetical pr...    31   0.82 

>AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical
           protein F09G2.4 protein.
          Length = 843

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
 Frame = -1

Query: 711 DEEMSEVPSKCVSSVRQVHVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAAL 532
           ++ + E+P+KCV    +V V   +E+IE EG  DGES  ++++   P  ++ +  S    
Sbjct: 546 NDHVEEMPTKCVEFKNRVEVSCRIEFIEYEGISDGESTKKLLAGLLPRQIIVVHGSRDDT 605

Query: 531 HTLKKHCESEGIEKVFL--PSVGETVDATTESHIYQVKLTDGLMRGLVWRQAGDA-ELAW 361
             L  +    G +   L  P  G  VDA+ ES IYQV L+D L+  + +++  +   LAW
Sbjct: 606 RDLVAYFADSGFDTTMLKAPEAGALVDASVESFIYQVALSDALLADIQFKEVSEGNSLAW 665

Query: 360 LSAVV 346
           + A V
Sbjct: 666 IDARV 670



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 22/71 (30%), Positives = 36/71 (50%)
 Frame = -1

Query: 252 AAFVNTVXXXXXXXXXXXXXLQPDLGAGTLTCCSGTLAVRRMENGQVSLEGVLSEEYYKV 73
           A FVN                + +  +GTL    G  ++RR + G   +EG  +++YYK+
Sbjct: 773 AVFVNDPKLSDFKNLLTDKGYKAEFLSGTLLINGGNCSIRRNDTGVFQMEGAFTKDYYKL 832

Query: 72  RELLYEQFAIV 40
           R L Y+QFA++
Sbjct: 833 RRLFYDQFAVL 843


>Z77653-3|CAB01126.1|  462|Caenorhabditis elegans Hypothetical
           protein T28H10.3 protein.
          Length = 462

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -1

Query: 612 DGES---LLRVVSQTKPWAVVGLRASEAALHTLKKHC 511
           DGES   + RV++QT+P  V+ LR    A+H  KK+C
Sbjct: 374 DGESEDLISRVLTQTRP--VLDLRCHHIAVHLFKKYC 408


>Z75551-5|CAA99935.1|  462|Caenorhabditis elegans Hypothetical
           protein T28H10.3 protein.
          Length = 462

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -1

Query: 612 DGES---LLRVVSQTKPWAVVGLRASEAALHTLKKHC 511
           DGES   + RV++QT+P  V+ LR    A+H  KK+C
Sbjct: 374 DGESEDLISRVLTQTRP--VLDLRCHHIAVHLFKKYC 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,521,624
Number of Sequences: 27780
Number of extensions: 208401
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)