Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h04f
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    74   2e-14
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    62   9e-11
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    26   4.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.2  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   6.9  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   6.9  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   6.9  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    25   6.9  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   6.9  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   9.1  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   9.1  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.1  

>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 44/102 (43%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
 Frame = +3

Query: 333 DAVLISHSDPLHLGALPYAVGKLGL-SCPIYATLPVYKMGQMFMYDLYQAHKNVSEFDLF 509
           D +L+SHSD  H+G L YA  K    +  IYATLP   MG+M M D  +++  +S+    
Sbjct: 45  DLILLSHSDLAHIGGLVYAYYKYDWKNAYIYATLPTINMGRMTMLDAIKSNY-ISDM--- 100

Query: 510 TLDDVDMAFDRIVQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
           +  DVD  FD I+ L+Y Q   + GK  GL IT   AGH+LG
Sbjct: 101 SKADVDAVFDSIIPLRYQQPTLLLGKCSGLTITAYNAGHTLG 142


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 61.7 bits (143), Expect = 9e-11
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
 Frame = +3

Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGWDEKFD----MVFIKELKRHVNSIDAVLISHSDPL 365
           GAG E    C+V+Q      +LD G    +     + F  E    ++++D +LISH    
Sbjct: 43  GAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFD--LSTVDVLLISHFHLD 100

Query: 366 HLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQAHKNVSEFDLFTLDDVDMAFDRI 545
           H+ +LPY + K      ++ T P   + +  + D  +      E  L+   D+  AFDRI
Sbjct: 101 HVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQLYDEKDLLAAFDRI 160

Query: 546 VQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
             + Y+ +IE++    G++ TP  AGH LG
Sbjct: 161 EAVDYHSTIEVE----GIKFTPYHAGHVLG 186


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 279 EKFDMVFIKELKRHVNSIDAVLISHSDPLHLGALPYAVGKL 401
           +++D VF KE   H NSI +++ S +  L L  LPYA+ +L
Sbjct: 162 QEYD-VFEKEEGNHKNSIYSIVSSLAIILGLVGLPYAIIRL 201


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 231 VLQIDEFKFLLDCGWDEKFDMVFIKELKRHVNSIDAVLISHSDPLHLGALPYAVGKLGLS 410
           VL    F   ++ G+  K   V   E    +N + A +  HS+P+   AL     ++G+S
Sbjct: 45  VLHGAPFPIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFDEIGIS 104


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 588 LFLSFQCSDCISTVRFCQKPYQHHPV*TNRTRTHSYGLGIN 466
           +F SF C +CIS  R   + Y       N+  T  Y + I+
Sbjct: 538 IFTSFSCYNCISGTRNISRQYSRDKFHYNQRTTIYYLVAIS 578


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 361 GSECDISTASIEFTCLLSSLMKTISNFSSHPQSRRNL 251
           G  C+    SI F C       T+S F  HP S+R++
Sbjct: 8   GHFCEAEGPSIIF-CTQKLHRSTVSKFFEHPTSKRSI 43


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 588 LFLSFQCSDCISTVRFCQKPYQHHPV*TNRTRTHSYGLGIN 466
           +F SF C +CIS  R   + Y       N+  T  Y + I+
Sbjct: 538 IFTSFSCYNCISGTRKYSRQYSRDKFHYNQRTTIYYLVAIS 578


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -2

Query: 439 YTGRVAYIGQLRPSFPTAYGR--APKCRGSECDISTASIEFTCLLSSLMKTISNFSSHPQ 266
           +  R  YIG     F T +     P    +  D+ +  +      SS+++   N +SH  
Sbjct: 432 HPSRQQYIGSSNSRFNTRHQTISTPVSGRASNDLPSPVVPTRSNSSSILQPSYNLNSHSS 491

Query: 265 SRRNLN 248
            RRN N
Sbjct: 492 DRRNTN 497


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 399 LGLSCPIYATLPVYKMGQMFMYDLYQAH 482
           +G++C + + L VYKM + F + +YQ H
Sbjct: 166 IGVTCILLSFL-VYKMNKAFGWIMYQQH 192


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 243  DEFKFLLDCGWDEKFDMVFIKELKR 317
            +E + L++ GW+   D+VF++ +KR
Sbjct: 1241 EEKELLVNLGWNYWHDIVFVETVKR 1265


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 581 RKRSRSPHYTTPSWPFP 631
           +++SRSP  + PS PFP
Sbjct: 412 KRKSRSPPQSLPSTPFP 428


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 490 TFLWAWYKSYMNICPILYTGRVAYIGQLRPSFPT 389
           +F+W W+ SY+     L+    A++  +RP+ PT
Sbjct: 272 SFIWNWFPSYIFQALSLF----AWVTWIRPNSPT 301


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 480 HKNVSEFDLFTLDDVDMAFD 539
           + +++EFD F +DD D  F+
Sbjct: 403 NSDIAEFDEFDIDDADFTFN 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,550
Number of Sequences: 5004
Number of extensions: 56565
Number of successful extensions: 150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)