Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h04f
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0344 - 22419152-22419250,22419460-22419554,22419952-224201... 170 9e-43
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 38 0.005
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377... 35 0.062
03_05_0341 + 23300588-23300710,23300958-23301363,23301463-233016... 30 1.8
08_02_1018 + 23640889-23641245,23641868-23641954,23642063-236421... 29 3.1
04_04_0263 + 24030132-24030539,24031575-24031586,24032023-240322... 28 5.4
05_03_0173 - 9210279-9210764,9210877-9211605,9213286-9213447 28 7.1
03_05_0345 + 23325842-23325964,23326384-23326828,23326965-233271... 28 7.1
03_05_0395 - 23763531-23764493,23764539-23764708,23764750-237651... 27 9.4
>09_06_0344 -
22419152-22419250,22419460-22419554,22419952-22420108,
22420825-22420869,22421080-22421211,22421496-22421594,
22421690-22421785,22421968-22422149,22422242-22422494,
22422867-22422974,22423037-22423094,22423462-22423613,
22423698-22423792,22424172-22424287,22424369-22424495,
22424565-22424661,22424745-22424913,22425879-22426027
Length = 742
Score = 170 bits (413), Expect = 9e-43
Identities = 78/156 (50%), Positives = 111/156 (71%)
Frame = +3
Query: 168 MTSIIKLHCLSGAGEETPPCYVLQIDEFKFLLDCGWDEKFDMVFIKELKRHVNSIDAVLI 347
M + +++ LSGA E P CY+L +D F+FLLDCGW + D ++ L + +IDAVL+
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 348 SHSDPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQAHKNVSEFDLFTLDDVD 527
SH+D +HLGALPYA+ LGLS P+YAT PV+++G + +YD + + + VS+FDLFTLDD+D
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISRRQVSDFDLFTLDDID 120
Query: 528 MAFDRIVQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
AF +V+LKY+Q+ + KG G+ I P AGH LG
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLG 156
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3
Query: 309 LKRHVNSIDAVLISHSDPLHLGALPYAVGKLGLSCPIYAT 428
+K+ + I+AV+I+H H+GALP+ + L S PI+A+
Sbjct: 132 IKKWSHKIEAVIITHGHEDHIGALPWVIPALDSSTPIFAS 171
>09_04_0020 +
13837257-13837281,13837364-13837550,13837655-13837727,
13837769-13837804,13838161-13838281,13838399-13838472,
13838594-13838730,13839262-13839325,13839693-13839758,
13840061-13840130,13840206-13840310,13840840-13840981,
13841343-13841439,13841939-13842460
Length = 572
Score = 34.7 bits (76), Expect = 0.062
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 26/176 (14%)
Frame = +3
Query: 186 LHCLS-GAGEET-PPCYVLQIDEFK-FLLDCGW-----DEK----FDMVFIKELKRHVNS 329
+ CL GAG+E C V+ K + DCG D + FD + + +
Sbjct: 3 IECLVLGAGQEVGKSCVVVTFGGGKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYTAA 62
Query: 330 IDAVLISHSDPLHLGALPYAVGKLGLSCPIYAT-------------LPVYKMGQMFMYDL 470
I V+I+H H+GALPY G P+Y T P + + + D
Sbjct: 63 ISCVVITHFHLDHIGALPYFTEVCGYHGPVYMTYYDCAALVYPFQQYPTKALAPLMLEDY 122
Query: 471 YQAH-KNVSEFDLFTLDDVDMAFDRIVQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
+ + E + ++ +D+ +++ L Q+I++ K L +R AGH LG
Sbjct: 123 RKVMVDHRGEEEQYSYEDILRCMRKVIPLDLKQTIQV-DKDLSIR--AYYAGHVLG 175
>03_05_0341 +
23300588-23300710,23300958-23301363,23301463-23301671,
23301944-23302298,23302392-23302630,23303777-23304055
Length = 536
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Frame = +3
Query: 228 YVLQIDEF--KFLLDCGWDEKFDMVFIKE----LKRHV-NSIDAVLISHSD 359
YV+++ E K LL CGW+ D IKE L RH+ NS VLI SD
Sbjct: 69 YVVEVTECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRYEVLILDSD 119
>08_02_1018 +
23640889-23641245,23641868-23641954,23642063-23642161,
23642255-23642456,23642569-23642690,23642942-23643226
Length = 383
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 168 MTSIIKLHCLSGAG--EET--PPCYVLQIDEFKFLLDCGWDEKFDMVFIKELKRHVNSI 332
MT ++ + CLS A EET P C LQI E +FL + + +++ + L + ++
Sbjct: 154 MTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAV 212
>04_04_0263 +
24030132-24030539,24031575-24031586,24032023-24032267,
24032380-24032900,24033387-24033877
Length = 558
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 629 GMASWEWCNAET*TFSFHFNAL 564
G+ SW+WC A +F NAL
Sbjct: 369 GLLSWDWCTARNPSFIKRINAL 390
>05_03_0173 - 9210279-9210764,9210877-9211605,9213286-9213447
Length = 458
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 276 DEKFDMVFIKELKRHVNSIDAVLISHSDPLHLGALPYAVGKLGLSC--PIYATLPVYKMG 449
+E DM+ + +I V I H DPLH+ + P + K P + ++
Sbjct: 117 NELLDMILENDSFSQSEAIPEVEIIHEDPLHVESEPDSTAKSSSQSQEPEEEEIHPLEIP 176
Query: 450 QMFMYDLYQAHKNVSEF 500
F DL++ + N S +
Sbjct: 177 FQFEEDLFEDYGNTSNY 193
>03_05_0345 +
23325842-23325964,23326384-23326828,23326965-23327188,
23327665-23328171,23328482-23328742
Length = 519
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Frame = +3
Query: 228 YVLQIDEF--KFLLDCGWDEKFDMVFIKE----LKRHV-NSIDAVLISHSD 359
Y++++ E K +L CGW+ D I+E L RH+ NS VLI SD
Sbjct: 69 YIVKVTEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRFEVLILDSD 119
>03_05_0395 -
23763531-23764493,23764539-23764708,23764750-23765112,
23765298-23765508,23766214-23766381
Length = 624
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 554 QLYDSVKSHINIIQCEQIELGHILMGLV*IVHEHLPHF 441
Q V+ H ++CE I HI + L + + +PHF
Sbjct: 497 QALKGVECHCRKMECEDIPCSHIFVVLKFLGFDTIPHF 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,926,943
Number of Sequences: 37544
Number of extensions: 341950
Number of successful extensions: 756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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