Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h04f
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22166| Best HMM Match : No HMM Matches (HMM E-Value=.)             233   9e-62
SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_17633| Best HMM Match : DUF308 (HMM E-Value=2.1)                    31   0.78 
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 28   7.3  
SB_42341| Best HMM Match : DUF701 (HMM E-Value=3)                      28   7.3  

>SB_22166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 577

 Score =  233 bits (570), Expect = 9e-62
 Identities = 100/156 (64%), Positives = 124/156 (79%)
 Frame = +3

Query: 168 MTSIIKLHCLSGAGEETPPCYVLQIDEFKFLLDCGWDEKFDMVFIKELKRHVNSIDAVLI 347
           MTSIIKL+ LSGA +E P CY+LQ+DEF+FLLDCGW+E  DM  ++ +KRHV  +DAVL+
Sbjct: 1   MTSIIKLNVLSGAHDEAPLCYLLQVDEFRFLLDCGWNETLDMEIMESIKRHVQQVDAVLV 60

Query: 348 SHSDPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQAHKNVSEFDLFTLDDVD 527
           S  D  H+G LPY VGK GL CPIY T+PVYKMGQMFMYD YQ H+N  EFD+F+LDDVD
Sbjct: 61  SFPDIYHMGGLPYLVGKCGLHCPIYTTIPVYKMGQMFMYDWYQCHQNSEEFDVFSLDDVD 120

Query: 528 MAFDRIVQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
             FD+I+QLKY+Q++ +KGKG G+ ITP  AGH +G
Sbjct: 121 AVFDKIIQLKYSQTVSLKGKGHGITITPYAAGHMIG 156


>SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +1

Query: 334 MLY*YHTRILYI*ELFHMQLENSVLAVQYMQLYRYTKWGRCSCTIYTKPIRMCPSSICSH 513
           MLY Y  R++    L  MQ    +  V    LY Y  W   +C +Y   I + P+S C  
Sbjct: 183 MLYLYEIRLV----LACMQYLYEIRLVLACMLYLYEIWLILACMLYLYEIWLVPAS-CMQ 237

Query: 514 WMMLIWLL 537
           ++  IWL+
Sbjct: 238 YLYEIWLV 245


>SB_17633| Best HMM Match : DUF308 (HMM E-Value=2.1)
          Length = 317

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 474 QAHKNVSEFDLFTLDDVDMAFDRIVQLKYNQSIEMKGKGLGLR 602
           + ++ V  F  F  DDVD   DR+V++ Y     MK   LG++
Sbjct: 186 ELNQTVPHFKPFMADDVDFIVDRLVEVGYGVMRYMKNLQLGVQ 228


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 400 SFPTAYGRAPKCRGSECDISTASIEFTCLLSSLMKTISNFSSHPQSRR 257
           S P+++G+    R S  D         C +S++  ++S+ S HPQS R
Sbjct: 364 SHPSSHGKQTSRRDSY-DGGEEDARMRCDVSAVSGSLSSVSGHPQSNR 410


>SB_42341| Best HMM Match : DUF701 (HMM E-Value=3)
          Length = 651

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 371 RSSSICSWKTRS*LSNICNSTGIQNGADVHVR 466
           R S +  W  R  L++ CN+    NG + HVR
Sbjct: 153 RQSGMYKWNVR--LTSCCNTLPTHNGGEAHVR 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,754,042
Number of Sequences: 59808
Number of extensions: 414206
Number of successful extensions: 909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)