Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h04f
(635 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and polyadenyl... 246 5e-65
BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenyl... 57 5e-08
AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and polyadeny... 57 5e-08
AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenyl... 57 5e-08
AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and polyadenyl... 54 3e-07
AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens ... 54 3e-07
CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein. 54 4e-07
AL139287-12|CAI23182.1| 308|Homo sapiens cleavage and polyadeny... 54 4e-07
AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and polyadeny... 54 4e-07
BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein. 48 3e-05
BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and polyadenyl... 48 3e-05
AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and polyadenyl... 48 3e-05
AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein. 48 3e-05
BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein. 47 5e-05
BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein. 47 5e-05
AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and polyadenyl... 47 5e-05
BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and polyadenyl... 46 9e-05
AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and polyadenyl... 44 3e-04
BC025267-1|AAH25267.1| 658|Homo sapiens integrator complex subu... 34 0.49
AK001733-1|BAA91867.1| 658|Homo sapiens protein ( Homo sapiens ... 34 0.49
>BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and
polyadenylation specific factor 2, 100kDa protein.
Length = 782
Score = 246 bits (602), Expect = 5e-65
Identities = 111/156 (71%), Positives = 129/156 (82%)
Frame = +3
Query: 168 MTSIIKLHCLSGAGEETPPCYVLQIDEFKFLLDCGWDEKFDMVFIKELKRHVNSIDAVLI 347
MTSIIKL LSG EE+ CY+LQ+DEF+FLLDCGWDE F M I L++HV+ IDAVL+
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 348 SHSDPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQAHKNVSEFDLFTLDDVD 527
SH DPLHLGALPYAVGKLGL+C IYAT+PVYKMGQMFMYDLYQ+ N +F LFTLDDVD
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 528 MAFDRIVQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
AFD+I QLK++Q + +KGKG GL ITPLPAGH +G
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIG 156
>BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 600
Score = 57.2 bits (132), Expect = 5e-08
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 10 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 69
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQ-AHKNVSEFDLFTLDDVDMA 533
H GALPY +G PIY T P + + + D + A E + FT +
Sbjct: 70 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 129
Query: 534 FDRIVQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
++V + +Q++++ + L I AGH LG
Sbjct: 130 MKKVVAVHLHQTVQVDDE---LEIKAYYAGHVLG 160
>AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 283
Score = 57.2 bits (132), Expect = 5e-08
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 77 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 136
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQ-AHKNVSEFDLFTLDDVDMA 533
H GALPY +G PIY T P + + + D + A E + FT +
Sbjct: 137 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 196
Query: 534 FDRIVQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
++V + +Q++++ + L I AGH LG
Sbjct: 197 MKKVVAVHLHQTVQVDDE---LEIKAYYAGHVLG 227
>AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 627
Score = 57.2 bits (132), Expect = 5e-08
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 37 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 96
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQ-AHKNVSEFDLFTLDDVDMA 533
H GALPY +G PIY T P + + + D + A E + FT +
Sbjct: 97 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 156
Query: 534 FDRIVQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
++V + +Q++++ + L I AGH LG
Sbjct: 157 MKKVVAVHLHQTVQVDDE---LEIKAYYAGHVLG 187
>AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 598
Score = 54.4 bits (125), Expect = 3e-07
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 30 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 89
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQ-AHKNVSEFDLFTLDDVDMA 533
H GALPY +G PIY T P + + + D + A E + FT +
Sbjct: 90 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 149
Query: 534 FDRIVQLKYNQSIEMK 581
++V + +Q++++K
Sbjct: 150 MKKVVAVHLHQTVQIK 165
>AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens
cDNA FLJ13294 fis, clone OVARC1001232, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 278
Score = 54.4 bits (125), Expect = 3e-07
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 10 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 69
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQ-AHKNVSEFDLFTLDDVDMA 533
H GALPY +G PIY T P + + + D + A E + FT +
Sbjct: 70 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 129
Query: 534 FDRIVQLKYNQSIEMK 581
++V + +Q++++K
Sbjct: 130 MKKVVAVHLHQTVQIK 145
>CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein.
Length = 600
Score = 54.0 bits (124), Expect = 4e-07
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 10 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 69
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQ-AHKNVSEFDLFTLDDVDMA 533
H GALPY +G PIY T + + + D + A E + FT +
Sbjct: 70 HLDHCGALPYFSEMVGYDGPIYMTHSTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 129
Query: 534 FDRIVQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
++V + +Q++++ + L I AGH LG
Sbjct: 130 MKKVVAVHLHQTVQVDDE---LEIKAYYAGHVLG 160
>AL139287-12|CAI23182.1| 308|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 308
Score = 54.0 bits (124), Expect = 4e-07
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 29 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 88
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQ-AHKNVSEFDLFTLDDVDMA 533
H GALPY +G PIY T P + + + D + A E + FT +
Sbjct: 89 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 148
Query: 534 FDRIVQLKYNQSIEMKGKG 590
++V + +Q+++++ G
Sbjct: 149 MKKVVAVHLHQTVQVRFPG 167
>AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 379
Score = 54.0 bits (124), Expect = 4e-07
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 17 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 76
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQ-AHKNVSEFDLFTLDDVDMA 533
H GALPY +G PIY T P + + + D + A E + FT +
Sbjct: 77 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 136
Query: 534 FDRIVQLKYNQSIEMKGKG 590
++V + +Q+++++ G
Sbjct: 137 MKKVVAVHLHQTVQVRFPG 155
>BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein.
Length = 554
Score = 48.0 bits (109), Expect = 3e-05
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGWD---EKFDMVFIKELKRHVNSIDAVLISHSDPLH 368
GAG+E C +L+ K +LDCG E D + +L ID +LISH H
Sbjct: 18 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-IDLLLISHFHLDH 76
Query: 369 LGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQAHKNVSEFD-LFTLDDVDMAFDRI 545
GALP+ + K + T + + + D Y N+S D L+T D++ + D+I
Sbjct: 77 CGALPWFLQKTSFKGRTFMTHATKAIYRWLLSD-YVKVSNISADDMLYTETDLEESMDKI 135
Query: 546 VQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
+ +++ E+ G++ AGH LG
Sbjct: 136 ETINFHEVKEV----AGIKFWCYHAGHVLG 161
>BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 48.0 bits (109), Expect = 3e-05
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGWD---EKFDMVFIKELKRHVNSIDAVLISHSDPLH 368
GAG+E C +L+ K +LDCG E D + +L ID +LISH H
Sbjct: 18 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-IDLLLISHFHLDH 76
Query: 369 LGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQAHKNVSEFD-LFTLDDVDMAFDRI 545
GALP+ + K + T + + + D Y N+S D L+T D++ + D+I
Sbjct: 77 CGALPWFLQKTSFKGRTFMTHATKAIYRWLLSD-YVKVSNISADDMLYTETDLEESMDKI 135
Query: 546 VQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
+ +++ E+ G++ AGH LG
Sbjct: 136 ETINFHEVKEV----AGIKFWCYHAGHVLG 161
>AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and
polyadenylation specificity factor 73 kDa subunit
protein.
Length = 684
Score = 48.0 bits (109), Expect = 3e-05
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGWD---EKFDMVFIKELKRHVNSIDAVLISHSDPLH 368
GAG+E C +L+ K +LDCG E D + +L ID +LISH H
Sbjct: 18 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-IDLLLISHFHLDH 76
Query: 369 LGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQAHKNVSEFD-LFTLDDVDMAFDRI 545
GALP+ + K + T + + + D Y N+S D L+T D++ + D+I
Sbjct: 77 CGALPWFLQKTSFKGRTFMTHATKAIYRWLLSD-YVKVSNISADDMLYTETDLEESMDKI 135
Query: 546 VQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
+ +++ E+ G++ AGH LG
Sbjct: 136 ETINFHEVKEV----AGIKFWCYHAGHVLG 161
>AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein.
Length = 684
Score = 48.0 bits (109), Expect = 3e-05
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGWD---EKFDMVFIKELKRHVNSIDAVLISHSDPLH 368
GAG+E C +L+ K +LDCG E D + +L ID +LISH H
Sbjct: 18 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-IDLLLISHFHLDH 76
Query: 369 LGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQAHKNVSEFD-LFTLDDVDMAFDRI 545
GALP+ + K + T + + + D Y N+S D L+T D++ + D+I
Sbjct: 77 CGALPWFLQKTSFKGRTFMTHATKAIYRWLLSD-YVKVSNISADDMLYTETDLEESMDKI 135
Query: 546 VQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
+ +++ E+ G++ AGH LG
Sbjct: 136 ETINFHEVKEV----AGIKFWCYHAGHVLG 161
>BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 47.2 bits (107), Expect = 5e-05
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 10 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 69
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYD 467
H GALPY +G PIY T P + + + D
Sbjct: 70 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLED 106
>BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 47.2 bits (107), Expect = 5e-05
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 10 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 69
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYD 467
H GALPY +G PIY T P + + + D
Sbjct: 70 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLED 106
>AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 401
Score = 47.2 bits (107), Expect = 5e-05
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGW------DEKF-DMVFIKELKRHVNSIDAVLISHS 356
GAG++ C ++ I +LDCG D +F D +I + R + +D V+ISH
Sbjct: 22 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 81
Query: 357 DPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYD 467
H GALPY +G PIY T P + + + D
Sbjct: 82 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLED 118
>BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 46.4 bits (105), Expect = 9e-05
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGWD---EKFDMVFIKELKRHVNSIDAVLISHSDPLH 368
GAG+E C +L+ K +LDCG E D + +L ID +LISH H
Sbjct: 18 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-IDLLLISHFHLDH 76
Query: 369 LGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQAHKNVSEFD-LFTLDDVDMAFDRI 545
GALP+ + K + T + + + D Y N+S D L+T D++ + D+I
Sbjct: 77 CGALPWFLQKTSFKGRTFMTHATKAIYRWLLSD-YVKVSNISADDMLYTETDLEESMDKI 135
Query: 546 VQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
+ ++ E+ G++ AGH LG
Sbjct: 136 ETINFHGVKEV----AGIKFWCYHAGHVLG 161
>AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa variant
protein.
Length = 684
Score = 44.4 bits (100), Expect = 3e-04
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Frame = +3
Query: 201 GAGEETP-PCYVLQIDEFKFLLDCGWD---EKFDMVFIKELKRHVNSIDAVLISHSDPLH 368
GAG+E C +L+ K +LDCG E D + +L ID +LISH H
Sbjct: 18 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-IDLLLISHFHLDH 76
Query: 369 LGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDLYQAHKNVSEFD-LFTLDDVDMAFDRI 545
GALP+ + K + T + + + D Y N+S D L+T ++ + D+I
Sbjct: 77 CGALPWFLQKTSFKGRTFMTHATKAIYRWLLSD-YVKVSNISADDMLYTETVLEESMDKI 135
Query: 546 VQLKYNQSIEMKGKGLGLRITPLPAGHSLG 635
+ +++ E+ G++ AGH LG
Sbjct: 136 ETINFHEVKEV----AGIKFWCYHAGHVLG 161
>BC025267-1|AAH25267.1| 658|Homo sapiens integrator complex subunit
9 protein.
Length = 658
Score = 33.9 bits (74), Expect = 0.49
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 180 IKLHCLSGAGEETPPCYVLQIDEFKFLLDCGWDEKFDMVFI 302
+KL+CLSG T PC VL+ +LDCG D + F+
Sbjct: 1 MKLYCLSG--HPTLPCNVLKFKSTTIMLDCGLDMTSTLNFL 39
Score = 32.7 bits (71), Expect = 1.1
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +3
Query: 321 VNSIDAVLISHSDPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDL 470
++++D +LIS+ + ALPY G + +YAT P ++G++ M +L
Sbjct: 93 LSTVDVILISNYHCMM--ALPYITEHTGFTGTVYATEPTVQIGRLLMEEL 140
>AK001733-1|BAA91867.1| 658|Homo sapiens protein ( Homo sapiens
cDNA FLJ10871 fis, clone NT2RP4001696, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 658
Score = 33.9 bits (74), Expect = 0.49
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 180 IKLHCLSGAGEETPPCYVLQIDEFKFLLDCGWDEKFDMVFI 302
+KL+CLSG T PC VL+ +LDCG D + F+
Sbjct: 1 MKLYCLSG--HPTLPCNVLKFKSTTIMLDCGLDMTSTLNFL 39
Score = 32.7 bits (71), Expect = 1.1
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +3
Query: 321 VNSIDAVLISHSDPLHLGALPYAVGKLGLSCPIYATLPVYKMGQMFMYDL 470
++++D +LIS+ + ALPY G + +YAT P ++G++ M +L
Sbjct: 93 LSTVDVILISNYHCMM--ALPYITEHTGFTGTVYATEPTVQIGRLLMEEL 140
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,148,759
Number of Sequences: 237096
Number of extensions: 1943781
Number of successful extensions: 3556
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3550
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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