Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g23r
(417 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 107 5e-25
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 103 1e-23
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 26 2.7
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 4.7
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 25 4.7
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 4.7
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51... 24 8.2
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 24 8.2
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 24 8.2
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 24 8.2
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 107 bits (258), Expect = 5e-25
Identities = 60/118 (50%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Frame = -2
Query: 416 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT 237
PNLQVIKA QSL SRGY+K ++ W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR
Sbjct: 38 PNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRP 97
Query: 236 ETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD-VGPGSADLEFKGGYGR 66
R GRP+ RS+ + YRR +KK D PG F+GG+GR
Sbjct: 98 AAPR---AGRPEPRERSSAADAGYRRA---------EKKDDGAAPGGFAPSFRGGFGR 143
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 103 bits (246), Expect = 1e-23
Identities = 57/117 (48%), Positives = 70/117 (59%)
Frame = -2
Query: 416 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT 237
PNLQVIKA QSL SRGY+K ++ W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR
Sbjct: 38 PNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRP 97
Query: 236 ETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGR 66
R GRP+ R++ D + YRR K P F+GG+GR
Sbjct: 98 TAPR---AGRPEPRERASAD-AGYRRA--------EKKDEGAAPSGFAPSFRGGFGR 142
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 172 DLSSAERAGASGRPTGPRRT 231
DLSSAER A GRP + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 206 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 93
P+A S+ +Y + A+ P +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 4.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 250 RLSVAGTISGGRCKNILKY 306
R+ G+++GG CK LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.0 bits (52), Expect = 4.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 278 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 171
P I P ++ V TVR G PD P+ S R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826
>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
L51-b|Schizosaccharomyces pombe|chr 2|||Manual
Length = 225
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +1
Query: 166 YADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGGRCK 291
+ DL RA + RP PR + V ++ + I+ +C+
Sbjct: 3 FPDLLRCSRAVSLARPDLPRNSPDVYDTKIPILQAITAKKCQ 44
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 311 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGR 207
IEYL + PP + P L + E + G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 98 LSLDQHQPFYHEVQHQGQQEY 160
L ++QH ++HE Q++ + EY
Sbjct: 164 LDIEQHLQYFHEWQNKPRVEY 184
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 24.2 bits (50), Expect = 8.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 280 LLKLCLQHLSAQYVQRQY 227
LLK+CL +SA Y+ Y
Sbjct: 123 LLKVCLDEMSASYIDYGY 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,867
Number of Sequences: 5004
Number of extensions: 27826
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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