Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g23r
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                130   6e-31
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     30   0.67 
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)                      29   1.2  
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)               28   3.6  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_55882| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   27   8.2  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             27   8.2  
SB_32297| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score =  130 bits (313), Expect = 6e-31
 Identities = 71/122 (58%), Positives = 82/122 (67%), Gaps = 4/122 (3%)
 Frame = -2

Query: 416 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-R 240
           PNL VIKA+QSLKSRGYV+E+F W+H+YW LTNEGI YLR FLHLP EIVPATL+R V R
Sbjct: 39  PNLHVIKALQSLKSRGYVEEKFCWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTR 98

Query: 239 TETVRRGPVGR--PDAPARSAE-DRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYG 69
            ET R  P G   P  P    + DR +YRR P  PGV   + K   G G    EF+ G+G
Sbjct: 99  AETARPRPKGMDGPRGPGEGGDRDRESYRRGP-PPGV---EGKGGAGSGFKP-EFRQGFG 153

Query: 68  RG 63
           RG
Sbjct: 154 RG 155


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 161 RTPAAPGVAPHDK-KADVGPGS 99
           +TPA PG+AP D  K  VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386


>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
          Length = 585

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 152 AAPGVAPHDKKADVGP 105
           A PG+APHDKK+  GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560


>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 224 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 105
           +GP+G P  P       +  R  P  PG  P  K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = -2

Query: 287 HLPPEIVPATLKRSVRTETVRRGPVGRPDAP----ARSAEDRSAYRRTPAAPG 141
           HL P ++   +  S+      RGP GRP  P     R    +   R  P +PG
Sbjct: 110 HLSPAVIRLCMGGSLTCPPGPRGPPGRPGHPGQKGTRGRRGQRGRRGNPGSPG 162


>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
          Length = 270

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 224 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 105
           +GP+G P  P       +  R  P  PG  P  K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 212  GRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 99
            G P+  + S+E R    RT  AP   P  K     PG+
Sbjct: 6325 GEPEGTSPSSESRIPVGRTTKAPTTKPASKTTTTRPGT 6362


>SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 152 AAPGVAPHDKKADVGP 105
           A  G+APHDKKA  GP
Sbjct: 377 ARHGLAPHDKKAGRGP 392


>SB_55882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = -2

Query: 293 FLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPG-VAPHDKKA 117
           +L LP EI+PA      R+ T R   +GR      S      + RT    G +A  ++  
Sbjct: 165 YLMLPLEIIPAVKSEHCRSATKRGRLIGRSKKSVCSPLPAFVFNRTEHGLGRLADAERGG 224

Query: 116 DVGPGSADLEFKGGYG 69
           D   G    E  G  G
Sbjct: 225 DSLKGGGRDEEGGNCG 240


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
 Frame = -2

Query: 344 RHFYWYLTNEGIEYLRIFL--HLPPEIVPATLKRSVRTETVRRGPVGRPDAP--ARSAED 177
           R FY   +  G+   RI L  + P +++P T  +S  +    +GP G P A   A+  + 
Sbjct: 90  RSFYTD-SKHGVSSSRILLSRNSPQKLLPVTPTKSSGSLDEGKGPNGSPSANIYAKQYKK 148

Query: 176 RSAYRR--TPAAPGVAPHDK-KADVGP 105
           R  Y R  +P +      +K K +V P
Sbjct: 149 RDTYERKYSPLSKNRTSFEKPKGEVSP 175


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -2

Query: 377 SRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 240
           SRG+VK+ +A+    W   +  + +L  +L L P+I   +  R++R
Sbjct: 143 SRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLAPDIASLSGIRTLR 187


>SB_32297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = -2

Query: 293 FLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPG-VAPHDKKA 117
           +L LP EI+PA      R+ T R   +GR      S      + RT    G +A  ++  
Sbjct: 65  YLMLPLEIIPAVKSEHCRSATKRGRLIGRSKKSVCSPLPAFVFNRTEHGLGRLADAERGG 124

Query: 116 DVGPGSADLEFKGGYG 69
           D   G    E  G  G
Sbjct: 125 DSLKGGGRDEEGGNCG 140


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 92   DQLSLDQHQPFYHEVQHQGQQEYVCMQICP 181
            D+   D H+ + HE + QG  E +C   CP
Sbjct: 978  DESEEDGHEDYCHECE-QGGDELICCDGCP 1006


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,184
Number of Sequences: 59808
Number of extensions: 218952
Number of successful extensions: 850
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)