Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g23r
(417 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 105 9e-24
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 103 5e-23
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont... 102 8e-23
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar... 28 2.9
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family... 26 8.9
At2g19390.1 68415.m02262 expressed protein 26 8.9
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 26 8.9
At1g60830.1 68414.m06846 U2 snRNP auxiliary factor large subunit... 26 8.9
>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
Length = 177
Score = 105 bits (253), Expect = 9e-24
Identities = 59/120 (49%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
Frame = -2
Query: 416 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT 237
PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 38 PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97
Query: 236 -ETVRRGPVG-RPDAPARSAEDRSAY-RRTPAAPGVAPHDKKADVGPGSADLEFKGGYGR 66
GP G R P RS DR + R G D+K P F+GG GR
Sbjct: 98 GGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPRGGDEKGG-APADFQPSFQGGGGR 156
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 103 bits (247), Expect = 5e-23
Identities = 60/125 (48%), Positives = 73/125 (58%), Gaps = 6/125 (4%)
Frame = -2
Query: 416 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT 237
PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGI++LR +L+LP EIVPATLK+ +
Sbjct: 39 PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98
Query: 236 ETVRRGPVG-RPDAPARS-----AEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGG 75
G G RP P R DR YR P + G + KA P F+GG
Sbjct: 99 LGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKSGG--EYGDKAG-APADYQPGFRGG 155
Query: 74 YGRGR 60
G R
Sbjct: 156 AGGAR 160
>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
contains similarity to 40S ribosomal protein S10
Length = 179
Score = 102 bits (245), Expect = 8e-23
Identities = 60/129 (46%), Positives = 74/129 (57%), Gaps = 11/129 (8%)
Frame = -2
Query: 416 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT 237
PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 38 PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97
Query: 236 -ETVRRGPVG-RPDAPARSA------EDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 81
GP G R P DR YR P A G +K P F+
Sbjct: 98 GGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGG--APADYQPSFQ 155
Query: 80 G---GYGRG 63
G G+GRG
Sbjct: 156 GSGRGFGRG 164
>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
receptor-like protein kinase (Ipomoea nil) (U77888)
Length = 1029
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 92 LEFKGGYGRGRPAS*FKQ*KNLK 24
L+F+GGY G S FK KNLK
Sbjct: 178 LDFRGGYFEGSVPSSFKNLKNLK 200
>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
protein identical to gi|4775268|emb|CAB42531
Length = 150
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/61 (26%), Positives = 21/61 (34%)
Frame = -2
Query: 278 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 99
P A K T P P A +S+ S +PAA G P D + P
Sbjct: 32 PSPTAAPTKAPTATTKAPSAPTKAPAAAPKSSSASSPKASSPAAEGPVPEDDYSASSPSD 91
Query: 98 A 96
+
Sbjct: 92 S 92
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 215 VGRPDAPARSAEDRSAYRRTPAAPGVAP 132
VGRP P R DR AY+R A AP
Sbjct: 632 VGRP--PTRKLSDRKAYKRQRATATNAP 657
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 26.2 bits (55), Expect = 8.9
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 139 TPGAAGVRL-YADL--SSAERAGASGRPTGPRRTVSV 240
TPG V L YAD+ SS R+G +GR G + V+V
Sbjct: 539 TPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAV 575
>At1g60830.1 68414.m06846 U2 snRNP auxiliary factor large subunit,
putative similar to GI:3850823 from (Nicotiana
plumbaginifolia) (J. Biol. Chem. 273 (51), 34603-34610
(1998))
Length = 111
Score = 26.2 bits (55), Expect = 8.9
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 139 TPGAAGVRL-YADL--SSAERAGASGRPTGPRRTVSV 240
TPG V L YAD+ SS R+G +GR G + V+V
Sbjct: 61 TPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAV 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,347,351
Number of Sequences: 28952
Number of extensions: 149908
Number of successful extensions: 439
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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