Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g23f
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 107 6e-24
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 106 8e-24
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 105 2e-23
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 0.81
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408... 30 1.1
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 29 1.4
08_02_0802 + 21386248-21387468 29 1.9
07_03_1296 + 25583195-25584385 29 1.9
01_05_0305 + 20659199-20660026,20660147-20660179 29 1.9
03_06_0519 - 34481751-34482722 29 2.5
02_05_0460 - 29224525-29224620,29225525-29226625 28 3.3
12_02_0020 - 12388777-12389062,12389637-12389818 28 4.3
03_05_0528 - 25268396-25269217 28 4.3
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 28 4.3
08_02_0955 + 22994266-22995630 27 5.7
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 27 7.5
09_03_0062 - 11969719-11970036,11970115-11970843 27 7.5
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 27 7.5
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 27 7.5
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 27 7.5
12_01_0858 + 8072608-8072931,8072990-8073028 27 10.0
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181... 27 10.0
03_03_0217 + 15500943-15502196 27 10.0
01_06_0513 - 29944888-29945943 27 10.0
01_01_0743 - 5763654-5766902 27 10.0
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 107 bits (256), Expect = 6e-24
Identities = 57/125 (45%), Positives = 74/125 (59%), Gaps = 5/125 (4%)
Frame = +2
Query: 2 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR- 178
PNL+VIK MQS KS+ YV+E F+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S +
Sbjct: 38 PNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKP 97
Query: 179 -TETVRRGPVG-RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVG--PGSADLEFKGGY 346
+ GP G RP P R DR + G P D G G A EF+ +
Sbjct: 98 PSRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEFQPSF 156
Query: 347 GRGRP 361
RP
Sbjct: 157 RGSRP 161
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 106 bits (255), Expect = 8e-24
Identities = 61/127 (48%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Frame = +2
Query: 2 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT 181
PNLQVIK MQS KS+ YV+E F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R
Sbjct: 38 PNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97
Query: 182 --ETVRRGPVG-RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVG--PGSADLEFKGGY 346
GP G RP P R DR + G P D G G A EF+ +
Sbjct: 98 PGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEFQPSF 156
Query: 347 --GRGRP 361
GRP
Sbjct: 157 RSSGGRP 163
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 105 bits (252), Expect = 2e-23
Identities = 58/120 (48%), Positives = 72/120 (60%), Gaps = 5/120 (4%)
Frame = +2
Query: 2 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT 181
PNLQVIK MQS KS+ YV+E F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R
Sbjct: 38 PNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97
Query: 182 --ETVRRGPVG-RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVG--PGSADLEFKGGY 346
GP G RP P R DR + G P D G G A EF+ +
Sbjct: 98 PGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEFQPSF 156
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 30.3 bits (65), Expect = 0.81
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = +2
Query: 17 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 187
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 188 VRRGP-----VGRPDAPARSAED 241
R+ + +P PA S +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>06_03_0930 -
26038341-26038508,26039114-26039254,26040799-26040858,
26040972-26041034,26041444-26041454,26041722-26041802,
26042783-26043020,26043563-26043997
Length = 398
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 224 ARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 355
AR RS+ RR+P+ G A + G ++ L++ GG G G
Sbjct: 58 ARGKRSRSSRRRSPSGSGSAATKGRWARGSPASPLDYSGGSGSG 101
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 230 SAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 361
SA RS R TP P + PH K+A P S L G G P
Sbjct: 3 SAAPRS--RLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAP 44
>08_02_0802 + 21386248-21387468
Length = 406
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 324 SAEPGPTSAFLS*GATPGAAGVRLYADLSSAE-RAGASGRPTGPRRTVSVRTERLSVAGT 148
S P P+S F G V DLS A R + RP GPR + R E +++
Sbjct: 123 SGSPEPSSGFFVAVVVDGEM-VLAAGDLSDAAYRRTRARRPAGPRPVLLSRREHVAMRDA 181
Query: 147 ISGGR 133
GGR
Sbjct: 182 GRGGR 186
>07_03_1296 + 25583195-25584385
Length = 396
Score = 29.1 bits (62), Expect = 1.9
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +2
Query: 128 LHLPPEIVPATLKRSVR--TETVRRGPVGRPDAPARSAEDRSAYRRTPA---APGVAPHD 292
LHL P PA +KRS R + + P DA R ++ A+ + AP +AP
Sbjct: 76 LHLQPNPDPAEVKRSYRRLSNLLSSNPRPGADAALRCVQEAFAHLSDSSANPAPALAPPP 135
Query: 293 KKADVGPGSA 322
A G SA
Sbjct: 136 APASGGDASA 145
>01_05_0305 + 20659199-20660026,20660147-20660179
Length = 286
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = +2
Query: 128 LHLPPEI-----VPATLKRSVRTETVRRGPVG--RPDAPARSAEDRSAYRRTPAAPGVA 283
L LPP + A S+ TV GP G +P P + +++RR P+A GV+
Sbjct: 122 LKLPPRLQAAAAAAAAADSSLSPNTVLHGPYGGNKPPRPLTRSGSTASHRRKPSAVGVS 180
>03_06_0519 - 34481751-34482722
Length = 323
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +2
Query: 191 RRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPAS 367
R+G G PA S+ + RR+ G AP D A+ GP S + PA+
Sbjct: 23 RKGKRGAEAPPATSSSTPTTARRSKRLAG-APPDHPAEAGPSSTNARRSSRLAGAPPAT 80
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +2
Query: 200 PVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 322
PV APA AE S R P P PH A V SA
Sbjct: 270 PVSPASAPAALAESSSEELRPPPLPSSHPHAHAAAVVAASA 310
>12_02_0020 - 12388777-12389062,12389637-12389818
Length = 155
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 203 VGRPDAPARSAEDRSAYRRTPAAP 274
+GRP R E+RS +RTP+ P
Sbjct: 47 IGRPKGEGREWEERSRSQRTPSPP 70
>03_05_0528 - 25268396-25269217
Length = 273
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 311 PGSADLEFKGGYGRG 355
PGS +LE GGYG G
Sbjct: 106 PGSTELEINGGYGEG 120
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 27.9 bits (59), Expect = 4.3
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 176 RTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAP--HDKKADVGPGSADLEFKGGYG 349
R + PV APA + +AY PAAP VAP D G G GG+G
Sbjct: 17 RRSDLAGAPVLAASAPAAANPYAAAYAPAPAAP-VAPAGGDFSRFGGRGRGGGAGGGGWG 75
Query: 350 RG 355
RG
Sbjct: 76 RG 77
>08_02_0955 + 22994266-22995630
Length = 454
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -2
Query: 330 SRSAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRT 187
SRS P +A LS +TP +A V A S A A R PRR+
Sbjct: 45 SRSKTPPHNAAVLS--STPASAAVDFVAASDSDAGADADARLASPRRS 90
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 187 CLCTY*ALKCCRHNFRRKVQEYSQVFNTLIG 95
CL Y +LK R+ ++ QE++ +F+ L G
Sbjct: 804 CLPAYPSLKVTRNQLQKITQEHASIFHILSG 834
>09_03_0062 - 11969719-11970036,11970115-11970843
Length = 348
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 110 QYPHWLGTSKSASRQ 66
Q+PHWLGT+ AS++
Sbjct: 172 QHPHWLGTAGYASKE 186
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 154 RHNFRRKVQEYSQVFNTLIG*VPVKVPPGKLFFDITSGLE 35
R+NFR KV+E S F + +G PP K+ D+ G++
Sbjct: 314 RNNFRAKVKEDSATFPSSLGMGRALSPP-KMSVDLEMGMK 352
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 27.1 bits (57), Expect = 7.5
Identities = 22/63 (34%), Positives = 23/63 (36%)
Frame = -2
Query: 324 SAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTI 145
S+ P SA TP AA A SS G SGR T P R S S T
Sbjct: 81 SSSPSTASAAARSSRTPSAAPGGTSARGSSTP-GGRSGRGTSPARAPSTSAPSTSPTATT 139
Query: 144 SGG 136
G
Sbjct: 140 RSG 142
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 283 CNTRGSRSTSVCRSVLSRAGWGIRTTNRATAYCL 182
C T ++ + + R WG R TNRAT + L
Sbjct: 327 CPTCLCTGMAMANNSIDRRAWGSRLTNRATLHIL 360
>12_01_0858 + 8072608-8072931,8072990-8073028
Length = 120
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 312 GPTSAFLS*GATPGAAGVRLYADLSSAERAGA 217
GP+SA +S G AG + AD + RAGA
Sbjct: 49 GPSSARISVDPAAGTAGAAVAADGQARARAGA 80
>06_01_0238 +
1815258-1815581,1816286-1816530,1816612-1816765,
1817043-1817257,1817351-1817468,1817685-1817895,
1818133-1818194,1818306-1818524
Length = 515
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 267 AGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGG 136
A V L+AD +A R AS R R V++RTE + ++ G
Sbjct: 408 AVVALFADGPTAIRDVASWRVKETERMVAIRTELTKLGASVEEG 451
>03_03_0217 + 15500943-15502196
Length = 417
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = +2
Query: 149 VPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK-----KADVGP 313
+P LKR + + R V APA ++ R A + P + +A GP
Sbjct: 262 LPERLKREIEEAKLLRRSVSAVTAPAAASSGRWASAASRTMSAARPSRRWSALLRALSGP 321
Query: 314 GSADLEFKGGYGR 352
+D++ GG GR
Sbjct: 322 RYSDMDGGGGGGR 334
>01_06_0513 - 29944888-29945943
Length = 351
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -2
Query: 324 SAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRR 190
S EP P+S + GA P AA S +G S P RR
Sbjct: 20 SPEPNPSSPLMDDGAAPAAAAAAELPS-PSPSSSGTSPSPRSKRR 63
>01_01_0743 - 5763654-5766902
Length = 1082
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 246 DLSSAERAGASGRPTGPRRTVSVRTERLSVAGTI 145
+ +SA R + R PR V V+ ERL AG +
Sbjct: 44 EAASAPRGAKNSRSRAPRTDVDVQIERLCRAGEL 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,700,538
Number of Sequences: 37544
Number of extensions: 223080
Number of successful extensions: 859
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -