Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g23f
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   105   1e-23
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   103   6e-23
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   102   1e-22
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar...    28   3.6  
At4g14280.1 68417.m02201 hypothetical protein                          27   8.4  

>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  105 bits (253), Expect = 1e-23
 Identities = 59/120 (49%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
 Frame = +2

Query: 2   PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT 181
           PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + 
Sbjct: 38  PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97

Query: 182 -ETVRRGPVG-RPDAPARSAEDRSAY-RRTPAAPGVAPHDKKADVGPGSADLEFKGGYGR 352
                 GP G R   P RS  DR  +  R     G    D+K    P      F+GG GR
Sbjct: 98  GGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPRGGDEKGG-APADFQPSFQGGGGR 156


>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  103 bits (247), Expect = 6e-23
 Identities = 60/125 (48%), Positives = 73/125 (58%), Gaps = 6/125 (4%)
 Frame = +2

Query: 2   PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT 181
           PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGI++LR +L+LP EIVPATLK+  + 
Sbjct: 39  PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98

Query: 182 ETVRRGPVG-RPDAPARS-----AEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGG 343
                G  G RP  P R        DR  YR  P + G   +  KA   P      F+GG
Sbjct: 99  LGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKSGG--EYGDKAG-APADYQPGFRGG 155

Query: 344 YGRGR 358
            G  R
Sbjct: 156 AGGAR 160


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  102 bits (245), Expect = 1e-22
 Identities = 60/129 (46%), Positives = 74/129 (57%), Gaps = 11/129 (8%)
 Frame = +2

Query: 2   PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT 181
           PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + 
Sbjct: 38  PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97

Query: 182 -ETVRRGPVG-RPDAPARSA------EDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 337
                 GP G R   P           DR  YR  P A G    +K     P      F+
Sbjct: 98  GGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGG--APADYQPSFQ 155

Query: 338 G---GYGRG 355
           G   G+GRG
Sbjct: 156 GSGRGFGRG 164


>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
           receptor-like protein kinase (Ipomoea nil) (U77888)
          Length = 1029

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 326 LEFKGGYGRGRPAS*FKQ*KNLK 394
           L+F+GGY  G   S FK  KNLK
Sbjct: 178 LDFRGGYFEGSVPSSFKNLKNLK 200


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 393 NKSMVFFWMELSFVFKNIYIS 455
           N S +F+W++++  F +I+IS
Sbjct: 189 NVSRIFYWLQIASAFASIFIS 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,251,087
Number of Sequences: 28952
Number of extensions: 169739
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)