Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g22r
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0115 + 27783170-27783331,27783510-27783705,27783825-27784411     33   0.15 
01_01_1014 - 8022787-8023935                                           28   7.5  
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767...    27   9.9  
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021...    27   9.9  
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...    27   9.9  
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671...    27   9.9  
02_01_0107 + 785993-786359,786773-787703,787807-787975,788472-78...    27   9.9  

>05_07_0115 + 27783170-27783331,27783510-27783705,27783825-27784411
          Length = 314

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = -3

Query: 424 WCDSYLADCRLEVYSTQQ-----YAHQGHPSPASGSVTVRDCPRCGGRCRLEHRHSSVHK 260
           WC+S+ +D R  V S+        A  G  + AS +V V+ CP CG R R E   +++  
Sbjct: 3   WCNSF-SDVRTAVDSSLSPAAAVAAAAGKKAAASLAVLVKMCPSCGHRARYEQETTTIQD 61

Query: 259 L 257
           L
Sbjct: 62  L 62


>01_01_1014 - 8022787-8023935
          Length = 382

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 430 HPWCDSYLADCRLEVYSTQQYAHQGHPSPASGSVTV 323
           HP+   Y  +  L  YS   Y  +  P+PASG+ T+
Sbjct: 139 HPFAILYPGNVGLLCYSISFYVAELQPAPASGTATL 174


>11_02_0042 -
           7672565-7672729,7672902-7672977,7673409-7674132,
           7674684-7674708,7675041-7675486,7676643-7676862,
           7677609-7678459,7678697-7679555
          Length = 1121

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 204 SVHPSKRKHIVFSHCASVQFPKIFEIDLIC 115
           ++ P      V S C    F KI +ID++C
Sbjct: 487 TIDPENLPRAVISRCQKYMFSKIKDIDIVC 516


>09_04_0302 +
           16501020-16501049,16501568-16501659,16502063-16502198,
           16502297-16502727,16502950-16503028
          Length = 255

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 424 WCDSYLADCRLEVYSTQQYAHQGHPSPAS 338
           W ++Y  D  +E+Y+ Q++ HQ  P PA+
Sbjct: 54  WAENY--DKVMELYNVQRFNHQAVPLPAT 80


>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 346 DSDGPDAHTVGCCIPQVDNL 405
           + D  +A TVGCC  +VDN+
Sbjct: 647 EKDEDEAETVGCCTLKVDNV 666


>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
            29768395-29768637,29768704-29770203
          Length = 1537

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 385  YSTQQYAHQGHPSPASGSVTVRDCPRCGGRCR 290
            Y  Q     G   PA+ S   R C   GG CR
Sbjct: 1371 YQPQHVEISGGEQPAAASCVFRPCEAAGGGCR 1402


>02_01_0107 +
           785993-786359,786773-787703,787807-787975,788472-788588,
           788815-788961
          Length = 576

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +1

Query: 169 KDDMLSFGWVDRSAEASPNLYIKVKSSAR*VYEPKSDGVPADTAPHNADSREL*RSHLPD 348
           +DD  + GW+   + ++   Y++ K+    + E +     +  AP   D + L  + L  
Sbjct: 250 EDDENNEGWLPAVSRSTHRRYLRRKARRDALKESEQSIETSSAAPSIDDDKILSENGLNP 309

Query: 349 SDGPDAHT 372
            DGP A T
Sbjct: 310 VDGPSADT 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,582,884
Number of Sequences: 37544
Number of extensions: 370862
Number of successful extensions: 950
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)