Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g20r
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 107 1e-23
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 85 6e-17
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 83 3e-16
01_05_0779 + 25128320-25128518,25129048-25129141,25129867-251300... 30 1.9
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 29 3.3
07_03_0702 + 20820796-20821495,20821569-20822119,20822254-20823018 28 5.8
04_04_1231 - 31934745-31935125,31935230-31935325,31936215-319362... 28 5.8
02_02_0557 + 11470259-11472307 28 5.8
02_02_0552 + 11426761-11428815 28 7.7
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 107 bits (256), Expect = 1e-23
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 5/144 (3%)
Frame = -1
Query: 561 ETRDGDTS-LQSESSPAIKHPLEHTWSYWLYT--NKSKE--WIHNLVELSTFATVEDYWC 397
E D D+ +++PA HPLEH W++W KSK+ W ++ + TF+TVED+W
Sbjct: 33 EIADDDSGHAPPQANPAAPHPLEHAWTFWFDNPQGKSKQATWGSSIRPIHTFSTVEDFWS 92
Query: 396 LYHYMKLPSELNHGQDYMIFKKGIQPTWEDPINEKGGRWIICESKSARNXXXXXXXXXXL 217
LY+ + PS+L G D+ FK I+P WEDPI GG+W S
Sbjct: 93 LYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTF--SCGRGKSDTMWLHTLLA 150
Query: 216 MIGENFEHPDLICGVVVNIKAKSK 145
MIGE F++ D ICG VV+++ K +
Sbjct: 151 MIGEQFDYGDEICGAVVSVRGKQE 174
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 84.6 bits (200), Expect = 6e-17
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Frame = -1
Query: 507 HPLEHTWSYWLYTNK-----SKEWIHNLVELSTFATVEDYWCLYHYMKLPSELNHGQDYM 343
HPL + W YT + S+ + N+ ++ F+TVE +W Y ++ P L D
Sbjct: 49 HPLRRRFVLW-YTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLH 107
Query: 342 IFKKGIQPTWEDPINEKGGRWIICESKSARNXXXXXXXXXXLMIGENFEHPDLICGVVVN 163
+FK+GI+P WEDP N GG+WII K+ +++G+ ++ D +CGVV++
Sbjct: 108 LFKEGIRPLWEDPANRSGGKWIIRFKKTVSG--RFWEDLVLVLVGDQLDYSDDVCGVVLS 165
Query: 162 IKAKSKICDIMDTW*RQTEKYE 97
++ DI+ W R ++
Sbjct: 166 VRFNE---DILSVWNRNASDHQ 184
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 82.6 bits (195), Expect = 3e-16
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Frame = -1
Query: 531 SESSPAIK--HPLEHTWSYWLYTNKSKE-----WIHNLVELSTFATVEDYWCLYHYMKLP 373
+E + A K H L W++W Y +SK W +L + TF TVE++W LY + P
Sbjct: 20 AEGAAAAKAPHKLHRQWAFW-YDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRP 78
Query: 372 SELNHGQDYMIFKKGIQPTWEDPINEKGGRWII-CESKSARNXXXXXXXXXXLMIGENFE 196
S++ D+ +FK G++P WEDP GG+W + C K+ +IGE F+
Sbjct: 79 SKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRKT--TLENMWLETLMALIGEQFD 136
Query: 195 HPDLICGVVVNIKAK 151
+ ICGVV +++ +
Sbjct: 137 ESEEICGVVASVRQR 151
>01_05_0779 +
25128320-25128518,25129048-25129141,25129867-25130078,
25130924-25131054,25131933-25132041,25132180-25132659,
25133194-25133531,25133810-25133977
Length = 576
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 486 SKCAREDVLLLARTRIED*YHHLASHVDWTVQTSLLIFFKIRNHTILLSSLQRSNVK 656
SK AR + L E H H D V +L +FF ++NHT+ + QR ++K
Sbjct: 393 SKSARSKQITLVLDLDETLVHSTLDHCD-NVDFTLQVFFNMKNHTVYVR--QRPHLK 446
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 561 ETRDGDTSLQSESSPAIKHPLEHTWSYWLYTNKSKE-WIHNLVELST 424
E ++GD ++E K +E W W TN+++ W+ N E+ST
Sbjct: 580 EAKEGDDETKTEVKKKTKTVVEKYWD-WELTNETQPIWLRNPREVST 625
>07_03_0702 + 20820796-20821495,20821569-20822119,20822254-20823018
Length = 671
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 74 SLLLFCRSSYFSVCLHHVSIMSHILLFALILTTTPQIKSGCSKF--SPIISRIRSNHRGS 247
S LL + + LH + H L AL+ T P + + ++F +P+ +S HR
Sbjct: 61 SRLLGVTTGNGNTALHVAATRGHAALAALVCATAPALAATRNRFLDTPLHCAAKSGHRD- 119
Query: 248 RLRADLLSQIIQ 283
+ A LLS++++
Sbjct: 120 -VAACLLSEMLR 130
>04_04_1231 -
31934745-31935125,31935230-31935325,31936215-31936277,
31936393-31936593,31936738-31936839,31936972-31937430,
31937524-31937712,31938325-31938442,31939033-31939307,
31939853-31939930
Length = 653
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 378 VSCSGINTSNLLQ*RMLIIQPSCVSILYSYLCKASSSKCAREDVL 512
VS +N+SN Q MLI+Q SC SY+ A A VL
Sbjct: 521 VSLLRVNSSNSNQSNMLILQESCTDASGSYVIYAPVDVVAMNVVL 565
>02_02_0557 + 11470259-11472307
Length = 682
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 86 FCRSSYFSVCLHHVSIMSHILLFALILTTTPQIKSG-CSKFSPIISRIRSNHRGSRLRAD 262
F S F + + SH + AL++T T + SG S + ++R + + + A
Sbjct: 99 FSASFVFGIITASPGVGSHGI--ALVITPTKDLSSGLASTYLGFLNRSSNGDDRNHIFAV 156
Query: 263 LLSQIIQRPPFSLIGSSHVG 322
L I + P FS I +HVG
Sbjct: 157 ELDTI-ENPEFSDINGNHVG 175
>02_02_0552 + 11426761-11428815
Length = 684
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 155 ALILTTTPQIKSG-CSKFSPIISRIRSNHRGSRLRADLLSQIIQRPPFSLIGSSHVG 322
AL++T T + SG S + ++R + + + A L I Q P FS I +HVG
Sbjct: 124 ALVITPTKDLSSGLASTYLGFLNRSSNGDNRNHIFAVELDTI-QSPEFSDIDDNHVG 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,760,583
Number of Sequences: 37544
Number of extensions: 337926
Number of successful extensions: 814
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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