Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g20r
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38642| Best HMM Match : IF4E (HMM E-Value=9.7e-12)                  48   7e-06
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         33   0.16 
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_50452| Best HMM Match : Nepo_coat_N (HMM E-Value=7.2)               29   2.6  
SB_50544| Best HMM Match : HALZ (HMM E-Value=1)                        29   3.4  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   3.4  

>SB_38642| Best HMM Match : IF4E (HMM E-Value=9.7e-12)
          Length = 263

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -1

Query: 330 GIQPTWEDPINEKGGRWIICESKSARNXXXXX--XXXXXLMIGENF-EHPDLICGVVVNI 160
           GI+P WED  N+ GGRW+I  +K+ R              +IGE F E+ + +CG VV I
Sbjct: 2   GIEPMWEDKRNKDGGRWLINTNKNQRQSDLDRFWLETLLCLIGEAFGEYSEGVCGAVVQI 61

Query: 159 KAK 151
           + K
Sbjct: 62  RNK 64


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +2

Query: 176  PQIKSGCSKFSPIISRIRSNHRGSRLRADLLSQ 274
            PQI+   S  SP+ISR RSN +GSRL  D  S+
Sbjct: 1950 PQIRLSTSS-SPVISRDRSNTKGSRLNGDPTSK 1981


>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +1

Query: 67  FNFSFTVLPIFIF-FCLSSPRVHNVTYFAFRF-NIDDNAAN*IGMFEIFTDHQQDQIQPQ 240
           F +   V   F+F +C +S R+ ++TY+ F    I + A   I    IF   +Q +I+PQ
Sbjct: 159 FTWILAVTHCFVFVYCFNSARLRDITYYYFALAMILELAIIVISYVIIFIKLRQRKIKPQ 218

Query: 241 RVKIARRFAFANYPTSALFVNRILPRRLNTFLKNHVILSM 360
             +I  R         ALF+  ++   L T+L + V+L++
Sbjct: 219 PNRIRPRDKELGV---ALFIVTVV--SLLTWLPDAVVLNL 253


>SB_50452| Best HMM Match : Nepo_coat_N (HMM E-Value=7.2)
          Length = 113

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 134 MSHILLFALILTTTPQIKSGCSKFSPIISRIRSNHRGSRLRADLLSQIIQR 286
           M H+LL  ++      +K+G  KF+P IS  +S     +L A L+ ++I +
Sbjct: 26  MVHVLLLIIVTLPLAVLKAGNVKFNPPISTTKS-RAIEKLGAGLIEKVIMK 75


>SB_50544| Best HMM Match : HALZ (HMM E-Value=1)
          Length = 123

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 153 KSKICDIMDTW*RQTEKYEDRQNSKREIEY*QKHQLLQS 37
           K+ I  I D   +Q     DRQ   RE+EY  + QLLQS
Sbjct: 63  KTNITQIYDLLVKQNSLLRDRQALTREVEY-LRQQLLQS 100


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 153 KSKICDIMDTW*RQTEKYEDRQNSKREIEY*QKHQLLQS 37
           K+ I  I D   +Q     DRQ   RE+EY  + QLLQS
Sbjct: 810 KTNITQIYDLLVKQNSLLRDRQALTREVEY-LRQQLLQS 847


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,024,385
Number of Sequences: 59808
Number of extensions: 398359
Number of successful extensions: 1219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)