Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g20f
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    27   0.12 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    27   0.12 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.63 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 244 MLIIQPSCVSILYSYLCKASSSKCAREDVLLLARTRIED*YHHLASHVD 98
           ++I+Q  C   +   + +  S  C   D+LL  R  +E  + ++ SH++
Sbjct: 225 LIIVQTGCT--ITRVIPQVCSGNCKLNDILLTVRPHLELTFENILSHIN 271


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 244 MLIIQPSCVSILYSYLCKASSSKCAREDVLLLARTRIED*YHHLASHVD 98
           ++I+Q  C   +   + +  S  C   D+LL  R  +E  + ++ SH++
Sbjct: 225 LIIVQTGCT--ITRVIPQVCSGNCKLNDILLTVRPHLELTFENILSHIN 271


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 244 FATVEDYWCLYHYMKLPSELNHGQDYMI 327
           +  ++D   LY++ +L S+ NH ++Y++
Sbjct: 211 YEIMKDNLLLYNHARLMSQDNHSKEYLV 238


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 548 EDKQKNMKIGKTVKEKLNINRNISYFNHNTTS 643
           +DK   + + K   + L    N+SY   N TS
Sbjct: 701 KDKDIILNVPKESTQSLTTTGNVSYLTTNNTS 732



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 274 INTSNLLQ*RMLIIQPSCVSILYSYLCKASSS 179
           +NT  LL    +I QP+  ++ + Y C+  S+
Sbjct: 38  MNTERLLPYVEIIEQPASKALRFRYECEGRSA 69


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 274 INTSNLLQ*RMLIIQPSCVSILYSYLCKASSS 179
           +NT  LL    +I QP+  ++ + Y C+  S+
Sbjct: 38  MNTERLLPYVEIIEQPASKALRFRYECEGRSA 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,000
Number of Sequences: 438
Number of extensions: 3549
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)