Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g19f
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.23 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.41 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.71 
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    27   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   2.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   3.8  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   3.8  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.0  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   5.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.6  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   6.6  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   6.6  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   8.8  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   8.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   8.8  

>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -1

Query: 619 SATSLSSSV---TDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*T 449
           SA+S SSS    + +    + ++   STPI++S+        +  +S +  S  GS+   
Sbjct: 138 SASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSA 197

Query: 448 VGKTTPVHNNNVAVG 404
             KT    +N+   G
Sbjct: 198 DAKTVSASSNSTISG 212


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 618  LPPACRPALPTTCAPKLKPIKWTRPQLPPP 529
            L P+  P LP   + +L P+  TRPQ+P P
Sbjct: 1046 LSPSVTPQLPPVSS-RLPPVSATRPQIPQP 1074


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
 Frame = -2

Query: 618 LPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTL-GTPLTAVLYRPLA 442
           LPP+  P+LP +  P L       P LPP   ++    LP   P     P  A    P  
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA--PPLPAGMPAAPPLPPAAPAPPPAP 480

Query: 441 RPRQSTTITLQSETASKAGR 382
            P  +  +   +E   + GR
Sbjct: 481 APAPAAPVASIAELPQQDGR 500



 Score = 28.3 bits (60), Expect = 0.94
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -2

Query: 615 PPACRPALPTTCAPKLKPI----KWTRPQL--PPPLLMSQTKKLPRNCPTLGTPLTAVLY 454
           PPA  PA+P   AP L P+    + + P +  PP L  S    LP + P    P+ A   
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP-SLPMGAPAA 446

Query: 453 RPL 445
            PL
Sbjct: 447 PPL 449


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
 Frame = -1

Query: 619 SATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGK 440
           S TS+SSS ++N     +  +VDS P  + V D    K  KE S+ G S       T+  
Sbjct: 368 STTSISSSPSENSDTSDDLTKVDS-PNKSLVNDNVSAKHDKE-SENGKSKFPPPSQTLVT 425

Query: 439 TTPVH--NNNVAVGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSIVVRVPDR 287
           T+ +    N  +   G +  +D    S  SV +  +    +++ S+   + +R
Sbjct: 426 TSTISAAGNEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRNSVSHEIQNR 478


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 408  TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST*LASAWARTL 587
            +AT   WT     +  T+  +     + SS A+ WS SS  + +    +T  +++   T 
Sbjct: 922  SATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981

Query: 588  SVT 596
            SV+
Sbjct: 982  SVS 984


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 343 AVDNNKERQVSIVVRVPDRVDIAICNNLMVVLVTSG 236
           A+ +  E  +++VVRV  R D  + +N  + + TSG
Sbjct: 64  ALHDENETNINVVVRVRGRTDQEVRDNSSLAVSTSG 99


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 438 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 557
           VLPT   T  S    VS SSL++F    ST     G  +T
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 131 SKRIGLHLPHSDCCLQGSW 75
           S  +   LPHSD  L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 227 WLFTRRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 400
           W+FT  ++N  QV  NG + S     +N   + PL    +G  S+G+     + +  LL 
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481

Query: 401 VSDC 412
            + C
Sbjct: 482 RTQC 485


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
 Frame = -2

Query: 609 ACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQ---TKKLP---RNCPTLGTPLTAVLYRP 448
           A  P +P T  PK        P  PPP L  Q   T +LP   RN   LG+ +   +  P
Sbjct: 218 AVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVN--IPPP 275

Query: 447 LARPRQSTTITLQSETAS 394
            A P Q       + T S
Sbjct: 276 PATPSQPPRPPTNASTRS 293


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 95  SHYVEGVSRYVWMPDGEGVPHLVDLEEPAEEDILMSR 205
           S Y +G+S  V +  G+GV H+V + E    + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 38/154 (24%), Positives = 54/154 (35%), Gaps = 5/154 (3%)
 Frame = +2

Query: 170 EEPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNG--NVNSIRNSNYNGNLPLFVIV-- 337
           E P E   L    GA +        N N     TN   N N+  N+N N           
Sbjct: 40  EPPVENLKLAPPPGATSVNTAVYNNNNNTSAANTNAAYNANTAANANANTATTTNAAATT 99

Query: 338 -HGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLV 514
              +N N  +  N    P   A +  N    D +GL +GL  T+ NG  +   +     V
Sbjct: 100 SAAYNPNAPANTNAAYYPNAAATTTTNADGSD-KGLFSGL--TSSNGYTTGNSYSRPSYV 156

Query: 515 WLINNGGGNWGRVHLIGFSLGAHVVGNAGRQAGG 616
             +  G G      L   +LG ++  + G   GG
Sbjct: 157 APVAAGLGGLALGGLASHALG-NLFHHRGHNGGG 189


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 618 LPPACRPALPTTCAPKLKPIKWTRPQLPP 532
           LPP  +PA P    P    +    P +PP
Sbjct: 171 LPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 284 NSIRNSNYNGNLPLFVIVHGWNSNGN 361
           +SIRNS++N  L LF  V    S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = -2

Query: 618 LPPACRPALPTTCAPKLKPIKWTRPQLPP----PLLMSQTKKLPRNCPTLGTPLTAVLYR 451
           LPP   PA P   +    P       +PP    PL+ + T   P + P +  P TA  + 
Sbjct: 210 LPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNV-LPFTAAQHF 268

Query: 450 P 448
           P
Sbjct: 269 P 269


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +1

Query: 193 PYVKERCKQPIL---AFHQT*PKQPSSYYKWQCQLYPELELQWKPASLCYCPRLEQQ 354
           P+ +E  ++P+L   A   +   QP+S      +LYP       PAS    P L  Q
Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQ 273


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 155 HLVDLEEPAEEDILMSRNGANN 220
           +LVD++EPAEE I + ++  N+
Sbjct: 52  NLVDVQEPAEETIPLEQDKEND 73


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 247  PKQPSSYYKWQCQLYPELELQWKPASLCYCPRL 345
            PK P  +Y+W  + +PE    W  +   YC  L
Sbjct: 2185 PKFPPVFYEWFVESFPEPN-NWVTSRQNYCRTL 2216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,262
Number of Sequences: 5004
Number of extensions: 60152
Number of successful extensions: 240
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)