Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g17r
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr...    29   2.4  
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote...    27   5.6  
At1g65440.1 68414.m07424 glycine-rich protein                          27   5.6  
At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    27   7.4  
At4g27870.1 68417.m04001 integral membrane family protein contai...    27   9.8  
At2g39810.1 68415.m04890 expressed protein                             27   9.8  
At1g42430.1 68414.m04893 expressed protein                             27   9.8  

>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
           protein
          Length = 362

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +2

Query: 194 NNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSDST 373
           +N +G  F G  ++  LR+DS+       V+N  + +  L     +N+N    D   D +
Sbjct: 60  DNFIGNFFTGAADSSSLRSDSTTCG----VNNSSDGQKQLGN---NNNNNSNKDIFLDRS 112

Query: 374 TVGKREIDDFGCENGLGGVGDSHSY 448
             G  EI      N +GG   S SY
Sbjct: 113 YGGFNEISQQHKSNDIGGGNSSGSY 137


>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1007

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 329 SNDNGGGHDWLSDSTTVGKREIDDFG-CENGLGGV 430
           SN+N  G   L D++TVG   + + G   N LGGV
Sbjct: 425 SNNNFSGSLPLQDASTVGNLSLTNIGLSHNSLGGV 459


>At1g65440.1 68414.m07424 glycine-rich protein 
          Length = 1647

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 326  WSNDNGGGHD--WLSDSTTVGKREIDDFGCENGLGGVGDSHSYDS 454
            W + +GGG    W +DS   GK+  +D G  +G GG G     +S
Sbjct: 1563 WGSGSGGGGSGGWGNDSG--GKKSSEDGGFGSGSGGGGSDWGNES 1605


>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 200 GVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERS 307
           G+GF  +G  +       + ISSW +  H DL + S
Sbjct: 532 GLGFSLLGSSSKTSDHMPTEISSWSLEGHKDLGKLS 567


>At4g27870.1 68417.m04001 integral membrane family protein contains
           Pfam PF01988: Integral membrane protein
          Length = 761

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 338 NGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNESNE 469
           +G GHD   DS+T+           +G GG  ++  + SN   E
Sbjct: 40  HGKGHDTSVDSSTITNTSSSSSSSFSGDGGTEETPDFHSNGDGE 83


>At2g39810.1 68415.m04890 expressed protein
          Length = 865

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 329 SNDNGGGHDWLSDSTTVGKREIDDFG 406
           S +N GG  W SD T+  + E+  FG
Sbjct: 825 SRNNSGGLRWRSDETSDDEDELTSFG 850


>At1g42430.1 68414.m04893 expressed protein
          Length = 435

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 227 VNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSDSTTVGKREIDDFG 406
           VN  G   D S  SW     +DL + +G   C WS   G  HD  S+ T     + D  G
Sbjct: 141 VNEAGTNEDGS--SWFRESGHDLGD-NGYR-CRWSRMGGRSHDGSSEWTETWWEKSDWTG 196

Query: 407 C-ENGLGGVGDSHSYDS 454
             E G+   G +   DS
Sbjct: 197 YKELGVEKSGKNSEGDS 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,778,269
Number of Sequences: 28952
Number of extensions: 160691
Number of successful extensions: 506
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)