Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g17f
(554 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC027985-1|AAH27985.1| 1063|Homo sapiens MAST1 protein protein. 31 3.6
AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein... 31 3.6
AD000092-1|AAB51171.1| 1237|Homo sapiens hypothetical human seri... 31 3.6
AB023190-1|BAA76817.1| 1583|Homo sapiens KIAA0973 protein protein. 31 3.6
S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprot... 30 6.3
L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprot... 30 6.3
D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprot... 30 6.3
D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprot... 30 6.3
D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprot... 30 6.3
DQ067198-1|AAY46157.1| 873|Homo sapiens very low density lipopr... 30 6.3
BC142653-1|AAI42654.1| 845|Homo sapiens very low density lipopr... 30 6.3
AL450467-4|CAH72453.1| 752|Homo sapiens very low density lipopr... 30 6.3
AL450467-3|CAH72455.1| 845|Homo sapiens very low density lipopr... 30 6.3
AL450467-2|CAH72454.1| 873|Homo sapiens very low density lipopr... 30 6.3
AK092381-1|BAC03874.1| 752|Homo sapiens protein ( Homo sapiens ... 30 6.3
L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprot... 29 8.3
>BC027985-1|AAH27985.1| 1063|Homo sapiens MAST1 protein protein.
Length = 1063
Score = 30.7 bits (66), Expect = 3.6
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 208 TPLVQIIVNVNQPGADAAIIPQPVIVDESDEVKP 309
TPLV I+V +PGA A++PQP+ D +P
Sbjct: 924 TPLVPIVVEPARPGA-KAVVPQPLGADSKGLQEP 956
>AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein
receptor related protein-deleted in tumor protein.
Length = 4599
Score = 30.7 bits (66), Expect = 3.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 195 CDWSNDNGGGHDWLSDSTTVGKREIDDFGCENG 97
CD +ND G D + + T ++D F C NG
Sbjct: 905 CDGANDCGSNEDESNQTCTARTCQVDQFSCGNG 937
>AD000092-1|AAB51171.1| 1237|Homo sapiens hypothetical human
serine-threonine protein kinase R31240_1 protein.
Length = 1237
Score = 30.7 bits (66), Expect = 3.6
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 208 TPLVQIIVNVNQPGADAAIIPQPVIVDESDEVKP 309
TPLV I+V +PGA A++PQP+ D +P
Sbjct: 1098 TPLVPIVVEPARPGA-KAVVPQPLGADSKGLQEP 1130
>AB023190-1|BAA76817.1| 1583|Homo sapiens KIAA0973 protein protein.
Length = 1583
Score = 30.7 bits (66), Expect = 3.6
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 208 TPLVQIIVNVNQPGADAAIIPQPVIVDESDEVKP 309
TPLV I+V +PGA A++PQP+ D +P
Sbjct: 1444 TPLVPIVVEPARPGA-KAVVPQPLGADSKGLQEP 1476
>S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 666 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 714
>L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 666 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 714
>D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 666 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 714
>D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprotein
receptor protein.
Length = 845
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 666 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 714
>D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 666 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 714
>DQ067198-1|AAY46157.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 666 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 714
>BC142653-1|AAI42654.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 666 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 714
>AL450467-4|CAH72453.1| 752|Homo sapiens very low density
lipoprotein receptor protein.
Length = 752
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 545 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 593
>AL450467-3|CAH72455.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 666 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 714
>AL450467-2|CAH72454.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 666 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 714
>AK092381-1|BAC03874.1| 752|Homo sapiens protein ( Homo sapiens
cDNA FLJ35062 fis, clone OCBBF2019195, highly similar to
VERY LOW-DENSITY LIPOPROTEIN RECEPTOR PRECURSOR. ).
Length = 752
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 545 AVYGANKFTGSELATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 593
>L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 29.5 bits (63), Expect = 8.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 336 SLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGG 169
+++G N G + LVNN ND+ + V+++L + SG WC+ +NGG
Sbjct: 666 AVYGANKFTGSEHATLVNN---LNDAQD----IIVYHELVQPSGKNWCEEDMENGG 714
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,315,672
Number of Sequences: 237096
Number of extensions: 1149903
Number of successful extensions: 3255
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3255
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -