Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g17f
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +3

Query: 147 CH*ANRALPRYRWTSRTRPAHSSRSD 224
           CH A   LPR +W       +  + D
Sbjct: 423 CHVAGEPLPRVQWLKNDEALNHDQPD 448


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -3

Query: 186 SNDNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNE 55
           +N+N G +D  + +         D  C  GLG  G  H  D  E
Sbjct: 248 NNNNNGANDNGNGNGASNNNNNGDMFCHTGLGHYG--HHPDPGE 289


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 546 FCVNFIRTIEVMPILLTLHLNKFY 475
           FC+ F+   E + I     +N+FY
Sbjct: 453 FCLLFLMFFECIAISWAFGVNRFY 476


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 546 FCVNFIRTIEVMPILLTLHLNKFY 475
           FC+ F+   E + I     +N+FY
Sbjct: 506 FCLLFLMFFECIAISWAFGVNRFY 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,858
Number of Sequences: 438
Number of extensions: 2615
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)