Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g16r
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0092 - 650534-650553,650638-651013,651125-651349                 29   3.2  
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    29   4.2  
11_06_0535 - 24740950-24741089,24741358-24741451,24741535-247416...    29   4.2  
11_06_0285 - 21914563-21914707,21914954-21915078,21915215-219153...    27   9.8  
11_04_0009 - 12132781-12133272                                         27   9.8  
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415...    27   9.8  

>02_01_0092 - 650534-650553,650638-651013,651125-651349
          Length = 206

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 335 SNDNRGGHDWLSDSTTVGKREVDDFGSEDRLLYGVESDEDFV 460
           S+ +    D +S  +  G  + DD+G   RL   + +D DFV
Sbjct: 161 SSGSAADDDRMSSMSCSGSPDDDDYGGSSRLCQWITTDSDFV 202


>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 359 DWLSDSTTVGKREVDDFGSEDRLLYGVESDEDFVQMLEKE 478
           DWLSDS  VGK ++       + +  V ++ D +Q  EKE
Sbjct: 840 DWLSDSGVVGKIKLASVQLAKKYMNRVATELDALQGTEKE 879


>11_06_0535 -
           24740950-24741089,24741358-24741451,24741535-24741690,
           24741782-24741841,24741930-24742142,24742423-24742492,
           24746129-24746463,24747616-24747647,24747749-24747776
          Length = 375

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 425 LLYGVESDEDFVQMLEKESSGGWVCAGAVDSVQNGLQL 538
           LL+GVE D DF + L KE S   V  G+V  ++N +++
Sbjct: 305 LLFGVEDDMDFARELIKEES-VLVLPGSVIGLKNWIRI 341


>11_06_0285 -
           21914563-21914707,21914954-21915078,21915215-21915382,
           21917184-21917475,21917927-21918096
          Length = 299

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 460 ADAREGEQRWLGLCWGCG*RPEWLAA 537
           ADA +   RWL  CWG G    W++A
Sbjct: 144 ADAED--DRWLPECWGRGIAAHWVSA 167


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 415 RRQAPVWG*ERRGFRADAREGEQRWLGLCWGCG 513
           RR+   W  ERR  + ++R  ++R +G   GCG
Sbjct: 106 RRRGEAWRRERRDSKIESRPSQRRRVGGRRGCG 138


>02_02_0444 +
           10340927-10341063,10341157-10341241,10341480-10341537,
           10343738-10345885,10345943-10346388
          Length = 957

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +2

Query: 341 DNRGGHDWLSDSTTVGKREVDDFGSEDRLLYGVESDEDFV-QMLEKESSGGWVCAGA-VD 514
           D  GG  WL D  TVG  +    G  D +  G++   + +   L++   GGW+  GA V 
Sbjct: 128 DEGGGGGWLYDGATVGGLD----GGGDVVGGGLDGGGEVLGGGLDEAGGGGWLYDGATVG 183

Query: 515 SVQNGLQLSISLSGFDGASG 574
            +  G    +   G DG  G
Sbjct: 184 GLVGG--GDVVGGGLDGGGG 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,560,511
Number of Sequences: 37544
Number of extensions: 251702
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)