Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g16r
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66230.1 68418.m08343 expressed protein                             32   0.38 
At5g19130.2 68418.m02277 GPI transamidase component family prote...    29   3.5  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    29   3.5  
At1g66230.1 68414.m07517 myb family transcription factor (MYB20)...    28   6.2  
At2g39810.1 68415.m04890 expressed protein                             27   8.2  

>At5g66230.1 68418.m08343 expressed protein
          Length = 329

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 22/79 (27%), Positives = 32/79 (40%)
 Frame = +2

Query: 362 WLSDSTTVGKREVDDFGSEDRLLYGVESDEDFVQMLEKESSGGWVCAGAVDSVQNGLQLS 541
           W   +    K E  D   E+   YG E DE++    E+E  G     G VD +  G++  
Sbjct: 223 WSMQANASAKDEEYDDEEEEAYSYGEEYDEEYYDEEEEEEEG-----GIVDGLCEGIRKM 277

Query: 542 ISLSGFDGASGSHSYDSNE 598
              + F G      YDS +
Sbjct: 278 SVETDFAGKHTRFVYDSED 296


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 176 AFFSLFGDNNGVGFDFIRLVNNDGLGNDSCISAWLVHVHNDLNERSGLAWCDWSN 340
           + FSL      +  D I LV +   G+   ++AWL   H+   + S L  CD  N
Sbjct: 197 SLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQN 251


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 176 AFFSLFGDNNGVGFDFIRLVNNDGLGNDSCISAWLVHVHNDLNERSGLAWCDWSN 340
           + FSL      +  D I LV +   G+   ++AWL   H+   + S L  CD  N
Sbjct: 200 SLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQN 254


>At1g66230.1 68414.m07517 myb family transcription factor (MYB20)
           similar to myb-related transcription factor GI:1430846
           from [Lycopersicon esculentum]; contains PFAM profile:
           Myb DNA binding domain PF00249
          Length = 282

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 323 WCDW---SNDNRGGHDWLSDSTTVGKREVDDFGSEDRLLYGVESDEDF 457
           W D+   +NDN  G D + ++  +   E+ DF S D LL   ES   F
Sbjct: 233 WSDYGNSNNDNNNGVDNIIENNMMSLWEISDFSSLD-LLLNDESSSTF 279


>At2g39810.1 68415.m04890 expressed protein
          Length = 865

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 335 SNDNRGGHDWLSDSTTVGKREVDDFGS 415
           S +N GG  W SD T+  + E+  FGS
Sbjct: 825 SRNNSGGLRWRSDETSDDEDELTSFGS 851


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,370,423
Number of Sequences: 28952
Number of extensions: 183738
Number of successful extensions: 465
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)