Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g15r
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.6  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   3.4  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   3.4  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 678  VTAEMARTRLAVADPI*ARQQTMKDQSRLAMIELRMLILVETNHNDF*CLTVVF 517
            V  ++  T + V + I   QQ +K+  +  +  LR L+      ND  C T+++
Sbjct: 1668 VRVDLFATAMHVYEVIMDDQQLLKNSKQELLAALRKLLSTMVEQNDHTCTTLIY 1721


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 70  LLNCTIIQQTYGLIYSK**LVDTKQQLKTTKHRKNTNQIHYTNQIH 207
           L NC I++  YG++Y    ++ T  QLK T   K    ++   QI+
Sbjct: 349 LENCNIVRPAYGVMYDY--VIPT--QLKATLETKKIQGLYLAGQIN 390


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 179 FVFLRCFVVFNCCLVSTNYYFE 114
           +VFL  F++F  C+V   YYFE
Sbjct: 35  YVFL--FIIFANCVVDVKYYFE 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,680
Number of Sequences: 5004
Number of extensions: 50459
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)