Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g15r
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 34 0.11
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 34 0.11
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein. 29 3.1
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL022288-5|CAA18366.1| 301|Caenorhabditis elegans Hypothetical ... 28 7.2
AL022288-1|CAA18362.1| 301|Caenorhabditis elegans Hypothetical ... 28 7.2
AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical ... 28 7.2
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 28 7.2
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = -1
Query: 348 ILKKMVYDLTATSGHFYCMHIN---YYMLVVFSAL-KFIKLLNSMINKMHDMYLICIMYL 181
IL V A F+ + N Y +L+V + ++L ++ + Y++C L
Sbjct: 138 ILLVFVLGFLALKSGFFGKNANIMAYVLLIVILPICALFQILIQFVSAQRNKYILCQFIL 197
Query: 180 ICIFTMFCCFQLLFSID*LLFRIYQ 106
+ I + CC LF + + ++Q
Sbjct: 198 VVIMKITCCIMSLFRVQATIHEVFQ 222
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = -1
Query: 348 ILKKMVYDLTATSGHFYCMHIN---YYMLVVFSAL-KFIKLLNSMINKMHDMYLICIMYL 181
IL V A F+ + N Y +L+V + ++L ++ + Y++C L
Sbjct: 138 ILLVFVLGFLALKSGFFGKNANIMAYVLLIVILPICALFQILIQFVSAQRNKYILCQFIL 197
Query: 180 ICIFTMFCCFQLLFSID*LLFRIYQ 106
+ I + CC LF + + ++Q
Sbjct: 198 VVIMKITCCIMSLFRVQATIHEVFQ 222
>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
Length = 1404
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -1
Query: 351 GILKKMVYDLTATSGHFYCMHINYY-MLVVFSALKFIKLLNSMINKMH-DMYLICIMYLI 178
G++ V + T G + N+Y M+++F AL FI +LN I + + + + ++
Sbjct: 1159 GVIDTNVQRMMCTMGKVEFVVSNFYVMILIFMAL-FISMLNRNIKRNYKETKWLLYSTVL 1217
Query: 177 CIFTMFCCFQLLFSID 130
C FT L +D
Sbjct: 1218 CFFTWVAWITLYLVLD 1233
>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical protein
F35H10.10 protein.
Length = 1404
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -1
Query: 351 GILKKMVYDLTATSGHFYCMHINYY-MLVVFSALKFIKLLNSMINKMH-DMYLICIMYLI 178
G++ V + T G + N+Y M+++F AL FI +LN I + + + + ++
Sbjct: 1159 GVIDTNVQRMMCTMGKVEFVVSNFYVMILIFMAL-FISMLNRNIKRNYKETKWLLYSTVL 1217
Query: 177 CIFTMFCCFQLLFSID 130
C FT L +D
Sbjct: 1218 CFFTWVAWITLYLVLD 1233
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
protein C48B4.4c protein.
Length = 1704
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 173 FLRCFVVFNCCLVSTNYYFEYIKPYVCCIIV 81
FL+ FV+F C ++ + E++ P + V
Sbjct: 310 FLKFFVIFLCSIIPLTFVMEFVSPAALIVTV 340
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
protein C48B4.4b protein.
Length = 1691
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 173 FLRCFVVFNCCLVSTNYYFEYIKPYVCCIIV 81
FL+ FV+F C ++ + E++ P + V
Sbjct: 310 FLKFFVIFLCSIIPLTFVMEFVSPAALIVTV 340
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
protein C48B4.4a protein.
Length = 1689
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 173 FLRCFVVFNCCLVSTNYYFEYIKPYVCCIIV 81
FL+ FV+F C ++ + E++ P + V
Sbjct: 310 FLKFFVIFLCSIIPLTFVMEFVSPAALIVTV 340
>AL022288-5|CAA18366.1| 301|Caenorhabditis elegans Hypothetical
protein ZK1025.8 protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +3
Query: 453 CEIKKKRQ*IQVSSLKII*FNEKQLLNIKNHYDSSPQESTFVIRSWPDVIGPS 611
CEI+K + ++ + ++ +NE Q L KN++ ++ + ST S + + PS
Sbjct: 52 CEIRKSMSQLTLNMMCLL-YNETQYLQDKNNFTNTWETSTRKCTSETNFVTPS 103
>AL022288-1|CAA18362.1| 301|Caenorhabditis elegans Hypothetical
protein ZK1025.2 protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +3
Query: 453 CEIKKKRQ*IQVSSLKII*FNEKQLLNIKNHYDSSPQESTFVIRSWPDVIGPS 611
CEI+K + ++ + ++ +NE Q L KN++ ++ + ST S + + PS
Sbjct: 52 CEIRKSMSQLTLNMMCLL-YNETQYLQDKNNFTNTWETSTRKCTSETNFVTPS 103
>AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical
protein Y22F5A.2 protein.
Length = 346
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 179 FVFLRCFVVFNCCLVSTNYYFEYIKPYV 96
F FL ++F ++ST+YY Y + Y+
Sbjct: 197 FFFLTLSIIFGTVILSTSYYILYAQLYI 224
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 173 FLRCFVVFNCCLVSTNYYFEYIKPYVCCIIV 81
FL+ FV+F C ++ + E++ P + V
Sbjct: 310 FLKFFVIFLCSIIPLTFVMEFVSPAALIVTV 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,131,101
Number of Sequences: 27780
Number of extensions: 283125
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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