Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g15r
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.8  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   6.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 139 KQQLKTTKHRKNTNQIHYTNQIHVMHFINH*IQ*LYKFQCTKDYK 273
           K+ ++    RKN   +++ +  HV H  +H I     F C +  K
Sbjct: 258 KELVRRDSRRKNYGGVYHLDNHHVHHANHHAILGHSGFLCERHQK 302


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 6   SNEIRVGSKLDIN*NYGN*LYIVELYNYTTNIWFDIFEIVISR 134
           S E ++ S L  N NY N  Y     NY   +++  + I I +
Sbjct: 309 SKERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINIEQ 351


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 117 EIVISRY*TTIENNKTS*KYKSNTLYKSNTCHAFY*SLNSI 239
           +I+ S    TI NN    KY  N    +N C   Y ++N I
Sbjct: 80  KIISSLSNRTIHNNNNY-KYNYNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 117 EIVISRY*TTIENNKTS*KYKSNTLYKSNTCHAFY*SLNSI 239
           +I+ S    TI NN    KY  N    +N C   Y ++N I
Sbjct: 80  KIISSLSNKTIHNNNNY-KYNYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 117 EIVISRY*TTIENNKTS*KYKSNTLYKSNTCHAFY*SLNSI 239
           +I+ S    TI NN    KY  N    +N C   Y ++N I
Sbjct: 80  KIISSLSNKTIHNNNNY-KYNYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 117 EIVISRY*TTIENNKTS*KYKSNTLYKSNTCHAFY*SLNSI 239
           +I+ S    TI NN    KY  N    +N C   Y ++N I
Sbjct: 80  KIISSLSNKTIHNNNNY-KYNYNNNNYNNNCKKLYYNINYI 119


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 176 VFLRCFVVFNCCLVSTNY 123
           VFL C+V F C  + T+Y
Sbjct: 280 VFLICWVPFFCVNIVTSY 297


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 170 LRCFVVFNCCLVSTNYYFEYIKPYVC 93
           LRC  +F   ++ T+Y+   + P  C
Sbjct: 5   LRCIYLFLSVILITSYFVTPVMPCNC 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,130
Number of Sequences: 438
Number of extensions: 3796
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)