Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g14r
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    62   8e-11
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    33   0.031
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    28   1.2  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.3  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    25   8.3  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
            Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 35/122 (28%), Positives = 55/122 (45%)
 Frame = -1

Query: 442  VKEALNIPDHVTWGSQSGNVFNMLREDFMKPVTEGIEKLLNETDIILTKYNGNLDLICDT 263
            V+EAL +       +   N+  + + D+M+         + E  + +  Y G+ D IC+ 
Sbjct: 867  VQEALGVEYDYKGCNTEVNIGFLFKGDWMRKTFRDDVTAILEAGLPVLIYAGDADYICNY 926

Query: 262  PGQILWVDRLRWPGSEAYKNAPRLPIWENNKLEGYYKAFENFRFFWINVAGHSVPRDNPE 83
             G   W D L W G   +  A   P   N K  G  K+F+NF +  +  AGH VP + PE
Sbjct: 927  MGNEAWTDALEWAGQREFYEAELKPWSPNGKEAGRGKSFKNFGYLRLYEAGHMVPFNQPE 986

Query: 82   GT 77
             +
Sbjct: 987  AS 988


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 33.5 bits (73), Expect = 0.031
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = -1

Query: 337 IEKLLNETDIILTKYNGNLDLICDTPGQILWVDRLRWPGSEAYKNAPRLPIW---ENNKL 167
           I+ L++   I+L  + G  D +C+          L W G+  ++N    P +    +++ 
Sbjct: 350 IQDLVSTVPILL--FYGENDFLCNYLSGEKLTRSLEWNGAVGFQNQSAQPFYLPGYSDQP 407

Query: 166 EGYYKAFENFRFFWINVAGHSVPRDNP 86
            G Y +  N  F  I  A H VP D+P
Sbjct: 408 SGSYVSSRNLTFARIVEASHMVPYDHP 434


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 723 YEDIQLPPGNPSDYSMKDSIFSPRLSGQTHSRSYSEE 613
           ++ + +P  NPS+ +  D+IF P++    HSRS S +
Sbjct: 69  HDPLHIPLPNPSNNN--DNIFHPQVHSSFHSRSASRQ 103


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 317 FIQEFFDSFCDWFHEIFP 370
           F++ + + + +WFH +FP
Sbjct: 143 FLEHYIEGYFEWFHPVFP 160


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
 Frame = -1

Query: 556  PDTRSPIELSRDMLIRDRPYMSPVRQDELNLNTLMNTQVKEALN-IPDHVTWGSQSG--- 389
            PD + P  +  + +IR     S +++  L L++ M   +   ++ +P  +      G   
Sbjct: 4325 PDAKFPYLVLNEEIIR--MLKSYIKKFRLTLSSAMVPDILVPVSYLPRSLDHSENEGKLL 4382

Query: 388  NVFNMLREDFMKPVTEGIEKLLNETDIILTKYNGNLDLIC 269
            N++N +  D +K ++   E  LNET+ IL +  G   +IC
Sbjct: 4383 NIYNSISADNLKILSAVHEIHLNETEKILLE--GFSKIIC 4420


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 708 LPPGNPSDYSMKDSIFSPRLSGQTH 634
           LPP  P D  + +  FS R+S   H
Sbjct: 88  LPPKTPEDQKLCNDFFSTRISPNLH 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,763
Number of Sequences: 5004
Number of extensions: 70017
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)