Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g14r
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0) 124 7e-29
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83) 29 3.8
SB_29855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_24998| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 5.0
SB_22011| Best HMM Match : Chordopox_G2 (HMM E-Value=1.7) 28 6.7
SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0) 28 8.8
SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0) 28 8.8
>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
Length = 446
Score = 124 bits (299), Expect = 7e-29
Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 7/212 (3%)
Frame = -1
Query: 670 QYLQSTTQWANTQQVVFRRTTRVDFYNILTKMEVSASVPDTRSPIELSRDMLIRDRPYMS 491
++ ++T W+ T+ V+ + T VD YNIL + PD L R+ L D+ Y +
Sbjct: 240 EWKKATDLWSETENVIAQTTDNVDVYNILIH-----NAPDFPKFPSLGRNTL--DQLYAN 292
Query: 490 PV-RQDELNLNTLMNTQVKEALNI-PDHVTWGSQSGNVFNMLREDFMKPVTEGIEKLLNE 317
V R + L LMN +K+ L I P+ V WGSQSG +F EDFM+PV + LLN+
Sbjct: 293 HVGRLNTDPLTQLMNGPIKKKLGIIPNDVIWGSQSGELFTYQSEDFMRPVISDVSYLLNK 352
Query: 316 TDIILTKYNGNLDLICDTPGQILWVDRLRWPGSEAYKNAPRLPIWENNKLE-----GYYK 152
++++ Y G LD+ICDT G W+ +L+W G + + N PR P++ + L+ + K
Sbjct: 353 INVVI--YQGQLDMICDTNGAENWMKKLKWNGLDDFLNTPRQPLYPPSGLKTKQTGAFRK 410
Query: 151 AFENFRFFWINVAGHSVPRDNPEGTNAFLRDM 56
+ N ++I AGH VP D E ++D+
Sbjct: 411 KYGNLSLYYIMKAGHMVPSDAGEMALEMVKDI 442
>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
Length = 957
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -1
Query: 487 VRQDELNLNTLMNTQVKEALNIPDHVTWGSQSGNVFNMLREDFMKPVTEGIEKLLNETD 311
+R+D NL + + T +++ +PD + + FNM E+ K V EG EK+ D
Sbjct: 16 LRRDIKNLRSTVQTMIEQNSQVPD---LEKLARHEFNMDEEERHKMVAEGEEKIKQVRD 71
>SB_29855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 562 SVPDTRSPIELSRDMLIRDRPYMS-PVRQDELNLNTLMNTQVKEALNIPD 416
SVPD++ +E D ++RP S P Q L + +TQ + ++PD
Sbjct: 97 SVPDSQQALEKESDPDTQERPLQSVPDSQQALGKESDPDTQERHLQSVPD 146
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 562 SVPDTRSPIELSRDMLIRDRPYMS-PVRQDELNLNTLMNTQVKEALNIPD 416
SVPD++ +E D ++RP S P Q L + +TQ + ++PD
Sbjct: 28 SVPDSQQALEKESDPDTQERPLQSEPDSQQVLGKESDPDTQERHLQSVPD 77
>SB_24998| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 335
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 562 SVPDTRSPIELSRDMLIRDRPYMS-PVRQDELNLNTLMNTQVKEALNIPD 416
SVPD++ +E D ++RP S P Q L + +TQ + ++PD
Sbjct: 97 SVPDSQQALEKESDPDTQERPLQSVPDSQQALGKESDPDTQERHLQSVPD 146
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 562 SVPDTRSPIELSRDMLIRDRPYMS-PVRQDELNLNTLMNTQVKEALNIPD 416
SVPD++ +E D ++RP S P Q L + +TQ + ++PD
Sbjct: 28 SVPDSQQALEKESDPDTQERPLQSEPDSQQVLGKESDPDTQERHLQSVPD 77
>SB_22011| Best HMM Match : Chordopox_G2 (HMM E-Value=1.7)
Length = 444
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 700 RESERLFXE-GQYLQSTTQWANTQQVVF 620
RE + L+ G+YL+S +W++T+ VF
Sbjct: 360 REEQMLYYNTGEYLESLLEWSSTKSAVF 387
>SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0)
Length = 548
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = -1
Query: 187 IWENNKLEGYYKAFENFRFFWINVAGHSVPRDNPEGTNAFLRDMTSFG*NYI 32
+WE GYYK F +N G S P + + +FG N +
Sbjct: 88 VWEAMHFAGYYKLDNLVAIFDVNRLGQSQPTSLEHDMETYRKRAEAFGWNAV 139
>SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1213
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 415 HVTWGSQSGNVFNMLREDFMKPVTEGIEKLLNETDIILTKY 293
H TW + ++ E ++ T +E LLN+T L KY
Sbjct: 1026 HATWENYYDPTLPLVTESLLRACTPIMEILLNDTKKTLNKY 1066
>SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)
Length = 635
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 89 VVPWYAMSCHIDPEESKILEGFIITF 166
V P+YAM C+ DP K+L G + F
Sbjct: 238 VEPFYAMKCNNDPAVLKLLAGLGLGF 263
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,587,034
Number of Sequences: 59808
Number of extensions: 503046
Number of successful extensions: 1690
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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