Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g14f
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   4.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 213 EWTFSIFLYWSCCV 172
           EW   +FLYW  C+
Sbjct: 330 EWVKVVFLYWLPCI 343


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 160 KTCELLLLPSHSRSLVQTDRIDLTH 86
           KT E+L +   ++   QTDR +L+H
Sbjct: 105 KTAEVLRVSGLTQQADQTDRDELSH 129


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 160 WWLFYTTAPVEKYTERP 210
           WW   T A   KY+ +P
Sbjct: 205 WWSXXTVAXTFKYSSKP 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,883
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)