Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g13r
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    28   6.8  
Z37139-11|CAO82010.1|  487|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z34799-9|CAO82035.1|  487|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U97592-2|AAB52870.1|  462|Caenorhabditis elegans Temporarily ass...    27   8.9  
U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily ass...    27   8.9  

>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 542 FKFSRVIIYLRNYCRVKMERRTQSGRGKI 456
           F FSR I Y+ N+C   ++RR +   G++
Sbjct: 121 FSFSRTITYVPNHCFTGVKRRIERQCGEV 149


>Z37139-11|CAO82010.1|  487|Caenorhabditis elegans Hypothetical
           protein F34D10.9 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 287 SPIKNIKMLMLIPNKKHIFNYEDKCRVL-TKMSPH 186
           SP K   +  L  N++  F YE   RVL +KM P+
Sbjct: 376 SPQKQFHLCYLDINRRRFFRYEHSARVLKSKMDPN 410


>Z34799-9|CAO82035.1|  487|Caenorhabditis elegans Hypothetical
           protein F34D10.9 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 287 SPIKNIKMLMLIPNKKHIFNYEDKCRVL-TKMSPH 186
           SP K   +  L  N++  F YE   RVL +KM P+
Sbjct: 376 SPQKQFHLCYLDINRRRFFRYEHSARVLKSKMDPN 410


>U97592-2|AAB52870.1|  462|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform a protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 7/13 (53%), Positives = 13/13 (100%)
 Frame = +1

Query: 577 VFFYDGSILFCRK 615
           +FF+DG+++FC+K
Sbjct: 290 IFFFDGAVMFCKK 302


>U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform b protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 7/13 (53%), Positives = 13/13 (100%)
 Frame = +1

Query: 577 VFFYDGSILFCRK 615
           +FF+DG+++FC+K
Sbjct: 466 IFFFDGAVMFCKK 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,911
Number of Sequences: 27780
Number of extensions: 256977
Number of successful extensions: 346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)