Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g13r
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52530.1 68416.m05778 protein kinase family protein contains ...    30   1.6  
At1g65250.1 68414.m07397 protein kinase family protein contains ...    28   6.3  
At1g65190.1 68414.m07391 protein kinase family protein contains ...    27   8.4  

>At3g52530.1 68416.m05778 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 351

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -3

Query: 528 GYNLLEELLSCKDGKAHSIRTRENTLILMFTYNY----ISTGERLIGCTVIFATLQKSRL 361
           G  L EEL++C DGK + IR   +  IL  T N+    I   +R I       T+++ R+
Sbjct: 19  GSLLHEELIACSDGKYNPIRMFSSDQILKATNNFDADHIIAKDRFIWYK---GTIEERRV 75

Query: 360 KFKGW 346
             K W
Sbjct: 76  LIKKW 80


>At1g65250.1 68414.m07397 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 372

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 528 GYNLLEELLSCKDGKAHSIRTRENTLILMFTYNY 427
           G  LLEEL+ C DGK++ I+      IL  T ++
Sbjct: 19  GAKLLEELIECCDGKSNPIKFFSADEILKATNDF 52


>At1g65190.1 68414.m07391 protein kinase family protein contains
           similarity to protein kinases
          Length = 396

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 528 GYNLLEELLSCKDGKAHSIR 469
           G  LLEEL+ C DGK++ I+
Sbjct: 19  GAKLLEELIECCDGKSNPIK 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,592
Number of Sequences: 28952
Number of extensions: 214677
Number of successful extensions: 321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)