Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g10f
         (543 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05120.1 68416.m00556 expressed protein low similarity to PrM...    29   2.0  
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden...    27   8.1  
At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pin...    27   8.1  
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    27   8.1  

>At3g05120.1 68416.m00556 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 345

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -1

Query: 366 RDNGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSS 187
           +D+     L GD++G  +  + ++R     +DV   +      GGN R+   +S L G  
Sbjct: 179 KDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVLGNILLNPMFGGNERTESEKS-LDG-K 236

Query: 186 HYTTVSDR 163
           ++ TV DR
Sbjct: 237 YFVTVRDR 244


>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
           identical to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 355

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 330 NNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSG 202
           NNG    +SG     SG  DV    ++RRG GG  R +    G
Sbjct: 88  NNG----YSGGYTKPSGEGDVSKSSYERRGGGGAPRGSFRGEG 126


>At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 358

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = -1

Query: 366 RDNGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSS 187
           +D+     L GD++G  +  + ++R T+  V V   +      GG  R+   ++ L G  
Sbjct: 179 KDSNVYVYLAGDSSGGNIAHNVAVRATNEGVKVLGNILLHPMFGGQERTQSEKT-LDG-K 236

Query: 186 HYTTVSDR 163
           ++ T+ DR
Sbjct: 237 YFVTIQDR 244


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 73  KPRRSGRRQRGISFWVFNC 17
           KPRR G R  G S++ FNC
Sbjct: 103 KPRRKGSRFGGSSYFHFNC 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,706,119
Number of Sequences: 28952
Number of extensions: 86783
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)