Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g07r
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    27   2.9  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   3.8  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   3.8  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   5.0  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.6  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   8.7  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   8.7  

>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 654 AILIAIAVTYVISWLPLNVFNLVADFS 574
           AI +A+++TYV+ W    VFN+V  F+
Sbjct: 297 AIALALSITYVLGW----VFNIVLAFT 319


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = +2

Query: 2   LNIKVLISYIISLFILAIFQYFTFWAH*NAKYNITSNLIIMTYLHKNTFIYTLTLKLF*Q 181
           L + V I + ISLF   IF     WA  +    + S ++  T L   +++   ++  F  
Sbjct: 408 LGMVVGICFFISLFFAPIFSSIPVWATGSTLVLVGSMMMKSTTLINWSYLGD-SIPAFIT 466

Query: 182 GTFYTFNTKVLYGTSVQMLCISKLEDSCY 268
                F   + YG    ++C + L    Y
Sbjct: 467 IALMPFTYSIAYGLIAGIICYALLNSIIY 495


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 52  NISVLHVLGSLKRQVQYYFKSN 117
           N+S    L SLK  V YY+KSN
Sbjct: 603 NVSDFSTLDSLKFTVTYYYKSN 624


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 367 DGIDCAGTVGAYRDREHQDVAVLPGFLTKSLLQITRIFQLR 245
           D  DC G +  YR  +  + +V+ G    +L+QI+R+  L+
Sbjct: 195 DSYDCPGYICVYRFEQKNNPSVVLG--DSTLIQISRVSDLQ 233


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 626 YVTAMAINIAGVFLVVLLRPRSLLCI*MWAITTTRTG 736
           Y+   +I +AGVFL V +R    L +     TT +TG
Sbjct: 647 YMLISSIQMAGVFLGVFIRKDDHLVVSKVTKTTRKTG 683


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 11  KVLISYIISL---FILAIFQYFTFWAH*NAKYNITSNLIIMTYLHKNTFIYTLTLKLF 175
           KVLI++IIS    F+ AIF +F+ +   N   NI + +++          + + L LF
Sbjct: 85  KVLITHIISAFLSFLSAIFVFFSIFLV-NQAVNIINIIVVFITTLLTCLAFAIELVLF 141


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 251 LEDSCYLQQAFSQKTWEHCDVL--VFPVTVCSNCASAVNSVSILR 379
           L+D+ Y + A  +  WE+ D +  +F V  C    +   S S L+
Sbjct: 15  LQDTYYQKSAIGKAEWEYIDPVDFMFAVAPCGGAIAITRSESNLQ 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,771
Number of Sequences: 5004
Number of extensions: 58386
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)