Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g07r
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0799 + 27809301-27811550                                         30   1.7  
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439           29   3.9  
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329...    29   5.2  
03_05_0069 - 20466717-20467373,20470285-20471247                       28   9.1  

>03_05_0799 + 27809301-27811550
          Length = 749

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 313 LGVP--GHGMLQLCQRSQFRLHPPISSPRAVN*RLLPAAALRQDLFEFLSEII 465
           LG P  GHG+L++  R+   +  P+SSP A + R   AA +    F  L  ++
Sbjct: 189 LGCPKAGHGVLRVVTRAANSMLSPVSSPTAEDARSPSAAVMMTTKFADLPRVV 241


>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
          Length = 1093

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 624  VISWLPLNVFNLVADFSSAPFKDEKTMTVTYAVCHMFGM 508
            +++W+ L +  ++A F SA F         YA C +FG+
Sbjct: 1039 ILTWIVLIIPIVIASFFSAAFSKALDFAGVYANCFLFGI 1077


>02_01_0459 +
           3298780-3298788,3298900-3299037,3299174-3299207,
           3299528-3299531,3299814-3299949,3300034-3300090,
           3301689-3301786,3301876-3301947,3302056-3302228,
           3302552-3302698,3303113-3303336,3305300-3305306,
           3305634-3305800,3306033-3306068,3306787-3307004,
           3307115-3307172,3307761-3307842,3308045-3308207,
           3308594-3308598,3308700-3308885,3308969-3309548,
           3309642-3309774,3309880-3309948,3310184-3310395,
           3310654-3310891,3311228-3311386,3311501-3311926,
           3312010-3312447,3312593-3312712,3312784-3313266,
           3313471-3314009,3314178-3314667,3314836-3314904,
           3315735-3315839,3315940-3316158,3316254-3316508,
           3316602-3316651,3317175-3317284,3317372-3317454,
           3317560-3317772,3317870-3318040
          Length = 2391

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 188 FYTFNTKVLYGTSVQMLCISKLEDSCYLQQAFSQKTWEHCDVLVFPVTVCSNCASAV 358
           FY+FNT    G ++Q L  S +  +  L+ +        CD L+ P+T   +   A+
Sbjct: 589 FYSFNT----GQNIQHLVASMVPSAIALEHSVGMALSSICDDLITPLTFFQDTVDAI 641


>03_05_0069 - 20466717-20467373,20470285-20471247
          Length = 539

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 286 SENLGALRRLGVPGHG-MLQLCQRSQFRLHPPISSPRAVN*RLLPAAALRQDLFEFL 453
           S+   AL  L + G   +++   R+  RLH P+   R    RLL  A  R+D+ +FL
Sbjct: 240 SDYFPALVGLDLDGQEKVIKKVMRTLNRLHDPVVEERVEEWRLLRKAGERRDVADFL 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,620,106
Number of Sequences: 37544
Number of extensions: 364038
Number of successful extensions: 884
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)