Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g07r
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    30   1.9  
At5g67610.1 68418.m08525 expressed protein                             29   4.4  
At5g57540.1 68418.m07189 xyloglucan:xyloglucosyl transferase, pu...    29   4.4  
At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase fa...    28   7.6  

>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 471 LNDNFRKEFEEILTKCCCRKKPLVNGTRTTNRRMETELTALAQLEHTVTGNTKTSQCSQ 295
           LN+N  +  +++  K   +   L      + R ++ ELT +  L H + G  KT Q S+
Sbjct: 397 LNENLDRALDDV-NKSKDKVADLTEKYEDSKRMLDIELTTVKNLRHELEGTKKTLQASR 454


>At5g67610.1 68418.m08525 expressed protein
          Length = 486

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/51 (43%), Positives = 27/51 (52%)
 Frame = +2

Query: 545 IVFSSLNGAELKSATRLNTLSGSQLMTYVTAMAINIAGVFLVVLLRPRSLL 697
           IVF  L    L SA+   TLS S    Y +AMA+ I  V L+VL +   LL
Sbjct: 166 IVFLLLGAVLLASAS---TLSQSLAFYYSSAMAVGIILVVLLVLFQGMKLL 213


>At5g57540.1 68418.m07189 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase (XTR9) GI:4218963 from
           [Arabidopsis thaliana]
          Length = 284

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
 Frame = -1

Query: 630 TYVISWLPLNVFNLVADFSSAPFKDEKTMTVTYAVCHMFGMSSAV---------SNPLLY 478
           TY + W PLN+  LV       FK+ +   V Y       + S++            +  
Sbjct: 144 TYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKT 203

Query: 477 GWLNDNFRKEFEEILTKCCCRKKPLVN 397
            W N  F   ++      CC +  L+N
Sbjct: 204 DWTNAPFSASYKSFNDVDCCSRTSLLN 230


>At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1)
           (Chromaffin granule ATPase) from {Homo sapiens}
           SP|Q9Y2Q0, {Mus musculus} SP|P98200, {Bos taurus}
           SP|Q29449; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase; ESTs gb|T45045 and
           gb|AA394473 come from this gene
          Length = 1203

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -1

Query: 471 LNDNFRKEFEEILTKC----CCRKKPLVNGTRTTNRRMETELTALA 346
           L D+F+K+F ++ T C    CCR  P      T   +  T  T LA
Sbjct: 818 LEDDFKKKFLDLATGCASVICCRSSPKQKALVTRLVKSGTGKTTLA 863


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,166,639
Number of Sequences: 28952
Number of extensions: 295721
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)