Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g07f
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    27   1.5  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    27   2.6  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   8.1  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   8.1  

>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 289 MGLDPSVNLTLNASAKQLIEASKGIQDPNILLEKFSQNRKVDDPTRS 429
           MG +  + + +     +LIE++  I   N+ +  F  N  + DP  S
Sbjct: 50  MGREDQLRIRVKEMLNELIESTFSIIQENVTINGFDANSALQDPKNS 96


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 163 GDGEVREVWSDRPPCNGADVNWTVCYFHIKAILNIL 270
           GD E+R++WSD        +NW       +A L I+
Sbjct: 16  GDAEIRKIWSDENRTQ-EYLNWEAALARAEASLGII 50


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 72  FHKKTSILVLNYCSRFFGGQS 134
           F++   +L+LNYC    GG S
Sbjct: 67  FYQSPLLLILNYCCELLGGIS 87


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 420  WIVDFSILRKLLQEYVWVL 364
            W++ F +LRKL  ++ W++
Sbjct: 1205 WLIIFYVLRKLSNKHTWMV 1223


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 514 PAFAPQII*RVHSPQLRSRPG*CKTLSVRISLDRRL 407
           P+F   +I  ++   LR +PG C T     + DRR+
Sbjct: 85  PSFVLHVISPINWDVLRRKPGCCLTKKNENTFDRRI 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,357
Number of Sequences: 5004
Number of extensions: 51667
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)