Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g07f
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046...    32   0.38 
12_02_0886 + 24014478-24014565,24014929-24015413                       31   0.67 
12_02_0889 + 24033905-24034127,24034689-24034960                       29   2.7  
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    29   2.7  
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896...    29   3.6  
04_03_0875 - 20475201-20475415,20475682-20476247,20478253-20478269     28   6.2  

>01_06_0405 +
           29103723-29103839,29103928-29104012,29104572-29104674,
           29104798-29104882,29105414-29105497,29105627-29105730,
           29106522-29106783,29106978-29107414,29107637-29107718,
           29109913-29110089,29110640-29110732,29110812-29110877,
           29110992-29111038,29111165-29111430,29111443-29111845,
           29111992-29112376
          Length = 931

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 274 PFYDDMGLDPSVNLTLNASAKQLIEASKG---IQDPNILLEKFSQNRKVDDP 420
           P   D  LDP  NL      K+ ++A K    I DP+ L +K S+   VDDP
Sbjct: 209 PMDADFLLDPISNLKKKTLKKRSVDAPKDVDFISDPSNLKKKTSEKDDVDDP 260


>12_02_0886 + 24014478-24014565,24014929-24015413
          Length = 190

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 396 SESKSRRSNEILTDSVLHHP-GRDRSCGECTRHIICGAKAGHENSKEHVHR 545
           S S+ RR   ++ + +   P G + SC  CT+ +   ++ G  + + HV+R
Sbjct: 128 SRSRRRRRRSVVWEHMEVDPSGNEASCRYCTKTLSANSRGGTSHLRRHVNR 178


>12_02_0889 + 24033905-24034127,24034689-24034960
          Length = 164

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 405 KSRRSNEILTDSVLHHPGRDRSCGECTRHIICGAKAGHENSKEHVHR 545
           + RR + +     L   G + SC  CT+ +   +K G  + + HV++
Sbjct: 105 RRRRRSVVWKYMTLDPSGNEASCTYCTKKLSANSKGGTSHLRRHVNK 151


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 534 VPCCSHDRLSHHR*YDECIPHSSDH 460
           +PCCS  RL +HR      PH   H
Sbjct: 22  LPCCSEARLHYHRRQHRRAPHRGHH 46


>09_04_0300 -
           16488358-16488447,16488684-16489116,16489377-16489642,
           16490015-16490044,16490282-16490606,16491752-16492035,
           16492154-16492376,16493117-16493173,16494454-16494947
          Length = 733

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 187 WSDRPPC--NGADVNWTVCYFHIKAILNILMPFYDDMGLDPSVNLTLNASAKQLIEA 351
           W + PP    G   NW  C  HIK+++NI  PF   +G+  +V    ++ AK +  A
Sbjct: 301 WVEAPPPMGGGGGPNW--CAKHIKSVMNIGGPF---LGVPKAVAGLFSSEAKDVAVA 352


>04_03_0875 - 20475201-20475415,20475682-20476247,20478253-20478269
          Length = 265

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 501 GAKAGHENSKEHVHRQ-FSRVRCPGLRG 581
           G+  GHE SKE  HRQ F+  R  G RG
Sbjct: 153 GSGGGHEPSKEQRHRQDFATTRRHGGRG 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,358,902
Number of Sequences: 37544
Number of extensions: 350731
Number of successful extensions: 797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)