Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g06r
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 163 2e-40
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 119 3e-27
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 51 8e-07
07_01_0479 + 3606663-3607448 37 0.019
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 34 0.13
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 31 0.94
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 30 2.2
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 29 3.8
04_01_0154 - 1775693-1775942,1776834-1777588 28 8.8
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 163 bits (395), Expect = 2e-40
Identities = 78/94 (82%), Positives = 83/94 (88%), Gaps = 1/94 (1%)
Frame = -2
Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
EEEEFSTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVP+
Sbjct: 12 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 71
Query: 551 T-XXXXXXKAVNKDKFISKMFLRGDSVILVLRNP 453
T VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 72 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 105
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 119 bits (286), Expect = 3e-27
Identities = 56/79 (70%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
Frame = -2
Query: 686 SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XXXXXXKAVNKDK 510
S + +VLINC+NNKKLLGRV+AFD HCNMVLENV+EMWTEVP+T VNKD+
Sbjct: 377 SCLGDIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDR 436
Query: 509 FISKMFLRGDSVILVLRNP 453
FISKMFLRGDSVI+VL+NP
Sbjct: 437 FISKMFLRGDSVIIVLKNP 455
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 51.2 bits (117), Expect = 8e-07
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = -2
Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
EEE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 11 EEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 68
Query: 551 TXXXXXXKAVNKDKFISKMFLRGDSVILVLRNPLATA 441
+ I +F+RGD VILV PL TA
Sbjct: 69 DDETYEEIVRTTKRTIPFLFVRGDGVILV-SPPLRTA 104
>07_01_0479 + 3606663-3607448
Length = 261
Score = 36.7 bits (81), Expect = 0.019
Identities = 17/68 (25%), Positives = 39/68 (57%)
Frame = -2
Query: 674 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXKAVNKDKFISKM 495
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + + + + +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSKTTGEREERRTLGLL 72
Query: 494 FLRGDSVI 471
LRG+ V+
Sbjct: 73 LLRGEEVV 80
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = -2
Query: 716 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 537
ST ++TQ +K Q+ + + + ++ GR+ FD + N+VL++ +E+
Sbjct: 3 STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI----------- 51
Query: 536 XXKAVNKD--KFISKMFLRGDSVILVLRNPLATAA 438
V KD K + ++ L+GD++ L++ + A
Sbjct: 52 ---NVKKDTRKSLGRILLKGDNITLMMNTSIRDMA 83
>06_03_0783 - 24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 11 LLDHCNFAMVSLKMLKHLYF-TKLLVTTCTK 100
L++HCN +VSL+ LK+L F TKL + C K
Sbjct: 1067 LIEHCN-KLVSLRSLKNLSFLTKLEIRNCLK 1096
>06_03_0785 -
24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 11 LLDHCNFAMVSLKMLKHLYF-TKLLVTTCTKSKYLFFNFGMFS 136
L++HCN +VSL+ L++L F +KL + C K L F FS
Sbjct: 779 LIEHCN-KLVSLRSLRNLSFLSKLEIRNCLKLVALPEMFDFFS 820
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -2
Query: 671 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 573
+++ + + +K+L+G + FD + NMVLE+V E
Sbjct: 90 SKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 122
>04_01_0154 - 1775693-1775942,1776834-1777588
Length = 334
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 640 RNSWVE*RLSTGIVTWY--WRMLRKCGLRYRELA 545
R SW RL+TG +W R R+ GLR R LA
Sbjct: 183 RGSWRRRRLATGASSWLLGGRGRRRSGLRRRRLA 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,382,502
Number of Sequences: 37544
Number of extensions: 327452
Number of successful extensions: 606
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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