Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g06r
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                  166   2e-41
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   40   0.002
SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)              34   0.10 
SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_10164| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)                28   9.0  

>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score =  166 bits (403), Expect = 2e-41
 Identities = 80/98 (81%), Positives = 88/98 (89%), Gaps = 1/98 (1%)
 Frame = -2

Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
           E+EEF+TGPLSVLTQSVKNNTQVLINCRNN+KLL RVKAFDRHCNMVLENVKEMWTE P+
Sbjct: 10  EQEEFNTGPLSVLTQSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPK 69

Query: 551 T-XXXXXXKAVNKDKFISKMFLRGDSVILVLRNPLATA 441
           +       K VNKD++I+KMFLRGDSVILVLRNPLATA
Sbjct: 70  SGKGKKKAKPVNKDRYIAKMFLRGDSVILVLRNPLATA 107


>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/50 (36%), Positives = 34/50 (68%)
 Frame = -2

Query: 707 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 558
           PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T V
Sbjct: 16  PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTV 63


>SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)
          Length = 974

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -2

Query: 716 STGPLSVLTQSVKNNTQVLINCRNNKKLL----GRVKAFDRHCNMVLENVKEMWT 564
           S GP+S+L + V+   ++ +  R  K L     G + AFD+H N+ L +V E++T
Sbjct: 3   SVGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVYT 57


>SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -2

Query: 716 STGPLSVLTQSVKNNTQVLINCRNNKKLL----GRVKAFDRHCNMVLENVKEMWT 564
           S GP+S+L + V+   ++ +  R  K L     G + AFD+H N+ L +V E++T
Sbjct: 148 SVGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVYT 202


>SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1529

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 480  ITAEEHFGDEFVLVYSFALLSFASSRYLSPHFLNILQYHVTMPVESLHSTQEFLIVTAI 656
            I+ EE+FG   ++VY F     +SS Y  P      QY  T+ ++   ST   +++T +
Sbjct: 1301 ISREEYFGGYGLVVYDFTPAGNSSSGYFQP------QYKGTVSLDLNFSTAPTVVLTVV 1353


>SB_10164| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)
          Length = 428

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 43  FKNVKASIFYKIVSYYLHQ 99
           FK  KASI Y+IV Y++H+
Sbjct: 213 FKVAKASIAYRIVLYFIHR 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,017,966
Number of Sequences: 59808
Number of extensions: 420619
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)