Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g06r
         (732 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15008-1|AAC13776.1|  118|Homo sapiens Sm D2 protein.                 167   3e-41
BC001930-1|AAH01930.1|  118|Homo sapiens small nuclear ribonucle...   167   3e-41
BC000486-1|AAH00486.1|  118|Homo sapiens small nuclear ribonucle...   167   3e-41
AC007191-2|AAD22673.1|  118|Homo sapiens SMD2_HUMAN protein.          167   3e-41
CR457185-1|CAG33466.1|  102|Homo sapiens LSM3 protein.                 50   1e-05
BC007055-1|AAH07055.1|  102|Homo sapiens LSM3 homolog, U6 small ...    50   1e-05
AJ238095-1|CAB45866.1|  102|Homo sapiens Lsm3 protein protein.         50   1e-05
AF182418-1|AAG14954.1|  102|Homo sapiens MDS017 protein.               50   1e-05
AF182289-1|AAD56227.1|  102|Homo sapiens U6 snRNA-associated Sm-...    50   1e-05
BC014600-1|AAH14600.1|   55|Homo sapiens Unknown (protein for MG...    44   7e-04

>U15008-1|AAC13776.1|  118|Homo sapiens Sm D2 protein.
          Length = 118

 Score =  167 bits (407), Expect = 3e-41
 Identities = 84/101 (83%), Positives = 90/101 (89%), Gaps = 1/101 (0%)
 Frame = -2

Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
           EEEEF+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP+
Sbjct: 20  EEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79

Query: 551 T-XXXXXXKAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 432
           +       K VNKD++ISKMFLRGDSVI+VLRNPL   AGK
Sbjct: 80  SGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118


>BC001930-1|AAH01930.1|  118|Homo sapiens small nuclear
           ribonucleoprotein D2 polypeptide 16.5kDa protein.
          Length = 118

 Score =  167 bits (407), Expect = 3e-41
 Identities = 84/101 (83%), Positives = 90/101 (89%), Gaps = 1/101 (0%)
 Frame = -2

Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
           EEEEF+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP+
Sbjct: 20  EEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79

Query: 551 T-XXXXXXKAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 432
           +       K VNKD++ISKMFLRGDSVI+VLRNPL   AGK
Sbjct: 80  SGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118


>BC000486-1|AAH00486.1|  118|Homo sapiens small nuclear
           ribonucleoprotein D2 polypeptide 16.5kDa protein.
          Length = 118

 Score =  167 bits (407), Expect = 3e-41
 Identities = 84/101 (83%), Positives = 90/101 (89%), Gaps = 1/101 (0%)
 Frame = -2

Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
           EEEEF+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP+
Sbjct: 20  EEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79

Query: 551 T-XXXXXXKAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 432
           +       K VNKD++ISKMFLRGDSVI+VLRNPL   AGK
Sbjct: 80  SGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118


>AC007191-2|AAD22673.1|  118|Homo sapiens SMD2_HUMAN protein.
          Length = 118

 Score =  167 bits (407), Expect = 3e-41
 Identities = 84/101 (83%), Positives = 90/101 (89%), Gaps = 1/101 (0%)
 Frame = -2

Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
           EEEEF+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP+
Sbjct: 20  EEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79

Query: 551 T-XXXXXXKAVNKDKFISKMFLRGDSVILVLRNPLATAAGK 432
           +       K VNKD++ISKMFLRGDSVI+VLRNPL   AGK
Sbjct: 80  SGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118


>CR457185-1|CAG33466.1|  102|Homo sapiens LSM3 protein.
          Length = 102

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 25/81 (30%), Positives = 47/81 (58%)
 Frame = -2

Query: 707 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXK 528
           PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T +          
Sbjct: 17  PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query: 527 AVNKDKFISKMFLRGDSVILV 465
             +  + I  +F+RGD V+LV
Sbjct: 75  YKSTKRNIPMLFVRGDGVVLV 95


>BC007055-1|AAH07055.1|  102|Homo sapiens LSM3 homolog, U6 small
           nuclear RNA associated (S. cerevisiae) protein.
          Length = 102

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 25/81 (30%), Positives = 47/81 (58%)
 Frame = -2

Query: 707 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXK 528
           PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T +          
Sbjct: 17  PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query: 527 AVNKDKFISKMFLRGDSVILV 465
             +  + I  +F+RGD V+LV
Sbjct: 75  YKSTKRNIPMLFVRGDGVVLV 95


>AJ238095-1|CAB45866.1|  102|Homo sapiens Lsm3 protein protein.
          Length = 102

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 25/81 (30%), Positives = 47/81 (58%)
 Frame = -2

Query: 707 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXK 528
           PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T +          
Sbjct: 17  PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query: 527 AVNKDKFISKMFLRGDSVILV 465
             +  + I  +F+RGD V+LV
Sbjct: 75  YKSTKRNIPMLFVRGDGVVLV 95


>AF182418-1|AAG14954.1|  102|Homo sapiens MDS017 protein.
          Length = 102

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 25/81 (30%), Positives = 47/81 (58%)
 Frame = -2

Query: 707 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXK 528
           PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T +          
Sbjct: 17  PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query: 527 AVNKDKFISKMFLRGDSVILV 465
             +  + I  +F+RGD V+LV
Sbjct: 75  YKSTKRNIPMLFVRGDGVVLV 95


>AF182289-1|AAD56227.1|  102|Homo sapiens U6 snRNA-associated
           Sm-like protein LSm3 protein.
          Length = 102

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 25/81 (30%), Positives = 47/81 (58%)
 Frame = -2

Query: 707 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXK 528
           PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T +          
Sbjct: 17  PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query: 527 AVNKDKFISKMFLRGDSVILV 465
             +  + I  +F+RGD V+LV
Sbjct: 75  YKSTKRNIPMLFVRGDGVVLV 95


>BC014600-1|AAH14600.1|   55|Homo sapiens Unknown (protein for
           MGC:26736) protein.
          Length = 55

 Score = 43.6 bits (98), Expect = 7e-04
 Identities = 27/46 (58%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
 Frame = -2

Query: 596 MVLENVKEMWTEVPR----TXXXXXXKAVNKDKFISKMFLRGDSVI 471
           MVLENVKEM TEVP+           K  NKD FISK+FL  DSVI
Sbjct: 1   MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISKLFLCRDSVI 46


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,892,092
Number of Sequences: 237096
Number of extensions: 2008640
Number of successful extensions: 3275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3265
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)