Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g06r
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 159 2e-39
At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 159 2e-39
At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 159 2e-39
At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 159 2e-39
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 54 7e-08
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 51 9e-07
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 37 0.016
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 36 0.037
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 36 0.037
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 31 0.60
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 30 1.4
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 30 1.4
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 30 1.4
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 28 7.3
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 28 7.3
>At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 159 bits (386), Expect = 2e-39
Identities = 75/94 (79%), Positives = 83/94 (88%), Gaps = 1/94 (1%)
Frame = -2
Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
EEEEF+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEVP+
Sbjct: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 73
Query: 551 T-XXXXXXKAVNKDKFISKMFLRGDSVILVLRNP 453
T VN+D+FISKMFLRGDSVI+VLRNP
Sbjct: 74 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 107
>At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 159 bits (386), Expect = 2e-39
Identities = 75/94 (79%), Positives = 83/94 (88%), Gaps = 1/94 (1%)
Frame = -2
Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
EEEEF+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEVP+
Sbjct: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 73
Query: 551 T-XXXXXXKAVNKDKFISKMFLRGDSVILVLRNP 453
T VN+D+FISKMFLRGDSVI+VLRNP
Sbjct: 74 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 107
>At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 159 bits (386), Expect = 2e-39
Identities = 75/94 (79%), Positives = 83/94 (88%), Gaps = 1/94 (1%)
Frame = -2
Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
EEEEF+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEVP+
Sbjct: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 73
Query: 551 T-XXXXXXKAVNKDKFISKMFLRGDSVILVLRNP 453
T VN+D+FISKMFLRGDSVI+VLRNP
Sbjct: 74 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 107
>At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 109
Score = 159 bits (386), Expect = 2e-39
Identities = 75/94 (79%), Positives = 83/94 (88%), Gaps = 1/94 (1%)
Frame = -2
Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
EEEEF+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEVP+
Sbjct: 15 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPK 74
Query: 551 T-XXXXXXKAVNKDKFISKMFLRGDSVILVLRNP 453
T VN+D+FISKMFLRGDSVI+VLRNP
Sbjct: 75 TGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNP 108
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 54.4 bits (125), Expect = 7e-08
Identities = 34/98 (34%), Positives = 54/98 (55%)
Frame = -2
Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
EEE PL ++ S+ + ++ + R++++L G++ AFD+H NM+L +V+E T V
Sbjct: 4 EEEATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 61
Query: 551 TXXXXXXKAVNKDKFISKMFLRGDSVILVLRNPLATAA 438
+ I +F+RGD VILV PL TAA
Sbjct: 62 DDETYEEIVRTTKRTIEFLFVRGDGVILV-SPPLRTAA 98
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 50.8 bits (116), Expect = 9e-07
Identities = 29/96 (30%), Positives = 53/96 (55%)
Frame = -2
Query: 731 EEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPR 552
EE+ PL ++ S++ ++ + R++++L G++ AFD+H NM+L +V+E+ T +
Sbjct: 4 EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 61
Query: 551 TXXXXXXKAVNKDKFISKMFLRGDSVILVLRNPLAT 444
+ + +F+RGD VILV PL T
Sbjct: 62 DDETYEEIVRTTKRTVPFLFVRGDGVILV-SPPLRT 96
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = -2
Query: 674 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXKAVNKDKFISKM 495
N ++ + ++ ++L+G+ AFDRH N+VL + +E P + + + + +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLV 73
Query: 494 FLRGDSVI 471
LRG+ VI
Sbjct: 74 LLRGEEVI 81
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/68 (26%), Positives = 38/68 (55%)
Frame = -2
Query: 674 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXKAVNKDKFISKM 495
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + + + +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPAKGKKINEEREDRRTLGLV 72
Query: 494 FLRGDSVI 471
LRG+ VI
Sbjct: 73 LLRGEEVI 80
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/68 (26%), Positives = 38/68 (55%)
Frame = -2
Query: 674 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXKAVNKDKFISKM 495
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + + + +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPAKGKKINEEREDRRTLGLV 72
Query: 494 FLRGDSVI 471
LRG+ VI
Sbjct: 73 LLRGEEVI 80
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = -2
Query: 671 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 573
+++ + + +K+L+G +K FD + NMVLE+V E
Sbjct: 20 SKIWVIMKGDKELVGILKGFDVYVNMVLEDVTE 52
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -2
Query: 668 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 573
++L+ R+ +KL+G +++FD+ N VLE E
Sbjct: 22 KLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -2
Query: 668 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 573
++L+ R+ +KL+G +++FD+ N VLE E
Sbjct: 22 KLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -2
Query: 668 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 573
++L+ R+ +KL+G +++FD+ N VLE E
Sbjct: 22 KLLVLLRDGRKLMGLLRSFDQFANAVLEEAYE 53
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -2
Query: 725 EEFSTGPLSVLTQSVKNNTQVLINCRNNKKLL--GRVKAFDRHCNMVLENVKEM 570
+ T P++++ + +++ ++ I K L GR+ FD + N+VL+ +E+
Sbjct: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -2
Query: 725 EEFSTGPLSVLTQSVKNNTQVLINCRNNKKLL--GRVKAFDRHCNMVLENVKEM 570
+ T P++++ + +++ ++ I K L GR+ FD + N+VL+ +E+
Sbjct: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,885,428
Number of Sequences: 28952
Number of extensions: 291531
Number of successful extensions: 630
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -