Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g06f
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...   144   9e-36
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    43   3e-05
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    29   0.54 
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    27   2.9  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    26   3.8  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   3.8  

>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score =  144 bits (349), Expect = 9e-36
 Identities = 72/109 (66%), Positives = 78/109 (71%)
 Frame = +3

Query: 117 KPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 296
           KPRS              FS GPLSVL Q+VKN+ QVLINCRNNKKLL RVKAFDRH NM
Sbjct: 7   KPRSELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNM 66

Query: 297 VLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLA 443
           VLENVKEMWTE  RT       A+NKD+FISKMFLRGD V+LV+R P A
Sbjct: 67  VLENVKEMWTEKKRTASGKKGKAINKDRFISKMFLRGDGVVLVVRIPSA 115


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +3

Query: 225 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLR 404
           V +  R +++L GR+ A+D H NMVL + +E+ T                 K    +F+R
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81

Query: 405 GDSVILV 425
           GDSVIL+
Sbjct: 82  GDSVILI 88


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = +3

Query: 222 QVLINCRNNKKLLGRVKAFDRHCNMVLE 305
           +V++  R+ KKL+G +++FD+  N++L+
Sbjct: 23  KVIVVLRDGKKLIGILRSFDQFANLMLQ 50


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 189 SVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 317
           S+L  S   + ++       +++ G +K FD+  N+VL++V+E
Sbjct: 24  SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 259 WVE*RLSTGIVTWYWRMLRKCGLRYREL 342
           W+E  L T +  WY+R L+  GL Y  L
Sbjct: 65  WMELTLHTPVSQWYFRDLQWWGLDYPPL 92


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 469 LLHYFPAAVARGFLSTKITESPRRNILEMNLSLFTALPFFPLP 341
           L  Y PA  A  F +  + +      L   + +F+ L F PLP
Sbjct: 434 LFIYLPAIFASLFFTESLFKRSEHLALRATIFIFSLLTFIPLP 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,099
Number of Sequences: 5004
Number of extensions: 44080
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)