Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g06f
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184...   155   4e-38
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332...   119   2e-27
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     49   3e-06
07_01_0479 + 3606663-3607448                                           37   0.015
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    34   0.10 
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962...    29   3.0  
04_01_0154 - 1775693-1775942,1776834-1777588                           28   6.8  
10_08_0983 + 22036489-22036505,22036814-22036928,22037040-220371...    27   9.0  
07_03_1036 - 23430643-23431311,23431441-23431668                       27   9.0  

>05_03_0462 -
           14316486-14316602,14316689-14316793,14318406-14318486,
           14318593-14318610
          Length = 106

 Score =  155 bits (375), Expect = 4e-38
 Identities = 74/90 (82%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
 Frame = +3

Query: 171 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 347
           FSTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVP+T   
Sbjct: 16  FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 75

Query: 348 XXXXXAVNKDKFISKMFLRGDSVILVLRNP 437
                 VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 76  KKKALPVNKDRFISKMFLRGDSVIIVLRNP 105


>01_07_0305 -
           42631214-42631330,42631423-42631527,42633208-42633216,
           42635198-42636142,42636349-42636450,42637210-42637302
          Length = 456

 Score =  119 bits (286), Expect = 2e-27
 Identities = 56/79 (70%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
 Frame = +3

Query: 204 SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDK 380
           S   + +VLINC+NNKKLLGRV+AFD HCNMVLENV+EMWTEVP+T         VNKD+
Sbjct: 377 SCLGDIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDR 436

Query: 381 FISKMFLRGDSVILVLRNP 437
           FISKMFLRGDSVI+VL+NP
Sbjct: 437 FISKMFLRGDSVIIVLKNP 455


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 29/89 (32%), Positives = 51/89 (57%)
 Frame = +3

Query: 183 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 362
           PL ++  S+  + ++ +  R++++L G++ A+D+H NM+L +V+E+ T V          
Sbjct: 19  PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEI 76

Query: 363 AVNKDKFISKMFLRGDSVILVLRNPLATA 449
                + I  +F+RGD VILV   PL TA
Sbjct: 77  VRTTKRTIPFLFVRGDGVILV-SPPLRTA 104


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 17/68 (25%), Positives = 39/68 (57%)
 Frame = +3

Query: 216 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 395
           N ++ +  ++ ++L+G+  AFDRH N+VL + +E + ++P +          + + +  +
Sbjct: 14  NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSKTTGEREERRTLGLL 72

Query: 396 FLRGDSVI 419
            LRG+ V+
Sbjct: 73  LLRGEEVV 80


>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
 Frame = +3

Query: 174 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 353
           ST    ++TQ +K   Q+ +  + + ++ GR+  FD + N+VL++ +E+           
Sbjct: 3   STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI----------- 51

Query: 354 XXXAVNKD--KFISKMFLRGDSVILVLRNPLATAA 452
               V KD  K + ++ L+GD++ L++   +   A
Sbjct: 52  ---NVKKDTRKSLGRILLKGDNITLMMNTSIRDMA 83


>05_04_0169 -
           18694418-18694453,18694516-18694627,18696095-18696243,
           18696980-18697033,18697110-18697222,18697323-18697374
          Length = 171

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 219 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 317
           +++ +  + +K+L+G +  FD + NMVLE+V E
Sbjct: 90  SKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 122


>04_01_0154 - 1775693-1775942,1776834-1777588
          Length = 334

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 250 RNSWVE*RLSTGIVTWY--WRMLRKCGLRYRELA 345
           R SW   RL+TG  +W    R  R+ GLR R LA
Sbjct: 183 RGSWRRRRLATGASSWLLGGRGRRRSGLRRRRLA 216


>10_08_0983 +
           22036489-22036505,22036814-22036928,22037040-22037194,
           22037416-22037677,22037826-22038014
          Length = 245

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 418 ITESPRRNILEMNLSLFTALPFFPLPVLGTSVHISLTFSNTMLQ 287
           +T +PR N  E+ LSL     FFP+ V+G+    +  F +  L+
Sbjct: 125 VTNAPRSNA-ELMLSLLGLTEFFPVLVIGSECDRAKPFPDPYLK 167


>07_03_1036 - 23430643-23431311,23431441-23431668
          Length = 298

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 336 SVPQSTFP*HSPIPCYNAGRKPSLYPGVS 250
           S P S+FP  SP+P Y+A    S +P  S
Sbjct: 102 SAPSSSFP--SPVPSYHASPASSSFPSPS 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,178,826
Number of Sequences: 37544
Number of extensions: 254064
Number of successful extensions: 460
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)