Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g04r
(394 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07) 56 8e-09
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06) 30 0.58
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 29 1.8
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 29 1.8
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_373| Best HMM Match : Somatomedin_B (HMM E-Value=3.5) 28 3.1
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15) 27 4.1
SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 27 5.4
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_39210| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_803| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
Length = 58
Score = 56.4 bits (130), Expect = 8e-09
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = -1
Query: 187 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 56
RP + + +KTV R YGG C CVK+RI+RAFLIEEQKIV
Sbjct: 2 RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIV 45
>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
Length = 299
Score = 30.3 bits (65), Expect = 0.58
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 341 IQATTVVQHKIKSKKNSKDTGWPLGLSV 258
I VQH K+KK + DT +P+G++V
Sbjct: 45 ISGEYAVQHSCKNKKETIDTDYPIGMAV 72
>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 334 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 245
RR++ T SN R++RTP G+ ++ VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -3
Query: 380 PAVKKLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCKKAQEDPKVWSVQEQTPW 201
P VK+ ++AYI T+ + K+K+K T P V K A E+ K + +++ P+
Sbjct: 494 PVVKR---ASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPY 550
>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 98 LLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTEFALALTTPW 235
L+D + + + + HCF+T+ T T ++ S T F L +PW
Sbjct: 542 LIDELVKQSSCPSRAHCFITMTTTQTSTKISIAPTNTFFL---SPW 584
>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 208 LRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 50
++G++ R + S C R V +VY +C +C + V+ + E ++ KV
Sbjct: 201 VKGVRDVRVNKVSERCLRGACVYKVYERCVCTRCTRGACVQG--LREVRVYKV 251
>SB_373| Best HMM Match : Somatomedin_B (HMM E-Value=3.5)
Length = 404
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 391 FPCHQLSKSLKMVQRLTFRRRLSYNTKSNQRRIVRT 284
FP Q+ + K RL RRL N +RR+++T
Sbjct: 160 FPNKQIRRRRKSNLRLALTRRLGKNNPGKKRRVMQT 195
>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
Length = 857
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 152 ENSETCLWWCPLP*MCQATHCQSLPH*RTKNCEGPQGTT 36
++ + LW P+P Q + C+S P T E P TT
Sbjct: 223 KHPDLMLWRKPVPKTDQQSECESSPGANTDRLESPARTT 261
>SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 42
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 253 LHTDKPSGHPVSLLFFFDLI 312
LHT +P+GHP ++ FD I
Sbjct: 5 LHTTEPTGHPCHIVCCFDAI 24
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 89 DNALLDTFMAEDTTINTFHCFLTVAKTGTFSRSSWLDTTEF 211
DN LL + T +N FL + K G + L+ TEF
Sbjct: 155 DNGLLFMETSAKTAMNVNDIFLAIGKKGKKKKGKTLNLTEF 195
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 110 MCQATHCQSLPH*RTKNCEGPQGT 39
+CQ HC LP R K+C+ P T
Sbjct: 115 VCQDDHCACLPCWRGKSCDQPDLT 138
>SB_39210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 392 FSLSPAVKKLENGAAAYIQATTVVQHK-IKSKKNSKDTGWPLGLSVCKKAQEDPK 231
+S S ++K + N AA + ++ +K I KKN + LG +C+K + + K
Sbjct: 210 YSRSISLKDIFNAAAKSSHSESIQWNKYINCKKNKTNLAAFLGEQLCEKGKREQK 264
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = -1
Query: 385 CHQLSKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKL 206
C L+ + ++ T + +Y K N +V P G Q ++ CG K++L
Sbjct: 36 CSALTSTSALIDHTTIKLFGTYEEKGNLFFVVVAPSGSDKIQPARRVASTRSCGNSKTRL 95
>SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 112 YGRGHHH-KHVSLFSYGSKDGNVQQV*LAGYHGVCSCTDHTL 234
YG H K + L YG+ G V+++ L GY HTL
Sbjct: 238 YGTSHGLVKEIDLRGYGTSHGPVKEIELRGYGTSYRGPSHTL 279
>SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -1
Query: 391 FPCHQLSKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKS 212
F CH+ + ++ K R +VRTPG RL + + PK P + +
Sbjct: 150 FLCHETDAPFVLKATSKVVGSKEFDQKCVFRPVVRTPGTRLTTKTIITPK--PLTDERQK 207
Query: 211 KLRGIQPAR 185
+L+ + A+
Sbjct: 208 ELKAAEAAK 216
>SB_803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = -3
Query: 134 LWWCPLP*M--CQATHCQSLPH 75
LWW L M C+A H SLPH
Sbjct: 230 LWWPKLENMHNCEACHGSSLPH 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,400,490
Number of Sequences: 59808
Number of extensions: 257580
Number of successful extensions: 768
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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