Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g04r
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical... 121 2e-28
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 29 1.6
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 29 1.6
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 28 2.7
U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical p... 27 6.3
AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical... 27 6.3
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z81118-8|CAB03326.3| 297|Caenorhabditis elegans Hypothetical pr... 26 8.4
U97016-5|AAB52352.1| 196|Caenorhabditis elegans Hypothetical pr... 26 8.4
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 26 8.4
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 26 8.4
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 26 8.4
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 26 8.4
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 26 8.4
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 26 8.4
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ... 26 8.4
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 26 8.4
>CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical
protein C42C1.14 protein.
Length = 110
Score = 121 bits (292), Expect = 2e-28
Identities = 59/101 (58%), Positives = 72/101 (71%)
Frame = -1
Query: 358 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 179
M R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK +IP+C KL GI PARP
Sbjct: 1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60
Query: 178 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 56
L ++TV R YGG L VK+RI RAFL+EEQKIV
Sbjct: 61 ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIV 101
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -1
Query: 367 SLKMVQRLTFRRRLSYNT-KSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 191
S +V +F +++ T K R++V L YQ++ K + PR + +L G+
Sbjct: 2318 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2377
Query: 190 ARPAERSRLCYRKKTVKR 137
A S C R T++R
Sbjct: 2378 TLLANNSETCRRNLTIQR 2395
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -1
Query: 367 SLKMVQRLTFRRRLSYNT-KSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 191
S +V +F +++ T K R++V L YQ++ K + PR + +L G+
Sbjct: 2321 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2380
Query: 190 ARPAERSRLCYRKKTVKR 137
A S C R T++R
Sbjct: 2381 TLLANNSETCRRNLTIQR 2398
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 27.9 bits (59), Expect = 2.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 373 SKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPG-GRLVYQYVKKPKKIPRCGQCKSKLRGI 197
S SL +V + RRR S ++S++R +VR+ G + + + R G+ +S R
Sbjct: 68 SPSLVVVISPSPRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRSRSSKRSR 127
Query: 196 QPARPAERSR 167
+R RSR
Sbjct: 128 SRSRSRSRSR 137
>U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical
protein C27H5.6 protein.
Length = 322
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 137 TFHCFLTVAKTGTFSRSSW 193
TFHC LTV + +R SW
Sbjct: 109 TFHCLLTVERVLAVNRVSW 127
>AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical
protein Y39B6A.33 protein.
Length = 438
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 358 MVQRLTFRRRLSYN--TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAR 185
+V +LT +++ + TK+ + V P + +KKP K+PR + +G + A
Sbjct: 67 VVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGNAILALKKGPKAAA 126
Query: 184 PAERSR 167
PA + +
Sbjct: 127 PAAKKK 132
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
protein C34F6.9 protein.
Length = 1181
Score = 26.2 bits (55), Expect = 8.4
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -1
Query: 262 QYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGG--VLCHKCVKQRIV 89
+YVK+ KIP+ K + ++P P + Y +T+ G VLC + +V
Sbjct: 529 KYVKQAAKIPQPAVLKEDPQAVKPRPPKKDVLAGYSVETIFLALTGETVLCRSHSLEDLV 588
Query: 88 RAFLIEEQKIVKVL 47
R E + +L
Sbjct: 589 RLKQEELDAVTSIL 602
>Z81118-8|CAB03326.3| 297|Caenorhabditis elegans Hypothetical
protein T10G3.3 protein.
Length = 297
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 115 GRGHHHKHVSLFSYGSKDGNVQQV*LAGYHGVCSCTDHTLGSSWAF 252
G+ H + KDG V+ SC DH++G +W F
Sbjct: 64 GQTVHEGNTKYECLKEKDGTVEIRRTLNIKRKKSCGDHSIGDTWVF 109
>U97016-5|AAB52352.1| 196|Caenorhabditis elegans Hypothetical
protein B0261.5 protein.
Length = 196
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 380 PAVKKLENGAAAYIQATTVVQHKIKSKKNSKD 285
P+ K + + + +TT+ Q K SK+ SKD
Sbjct: 30 PSQSKKKPSKVSTVTSTTISQEKTNSKRGSKD 61
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 36 CCALRTFTIFCSSMRKALTMRCLTHL 113
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 36 CCALRTFTIFCSSMRKALTMRCLTHL 113
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 36 CCALRTFTIFCSSMRKALTMRCLTHL 113
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1c protein.
Length = 1131
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 36 CCALRTFTIFCSSMRKALTMRCLTHL 113
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1b protein.
Length = 1118
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 36 CCALRTFTIFCSSMRKALTMRCLTHL 113
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1a protein.
Length = 1140
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 36 CCALRTFTIFCSSMRKALTMRCLTHL 113
C L + T FC+SM + R +THL
Sbjct: 47 CFLLSSITTFCASMILVVIWRVVTHL 72
>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
protein R155.2 protein.
Length = 1308
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 205 GVCSCTDHTLGSSWAFLHTDKPSGHPVSLLFFFD 306
GV H L SSW +L+T K + +SL+ + +
Sbjct: 1118 GVQLTVTHNLMSSWTYLNTQKTTISIISLIQYLN 1151
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 214 SKLRGIQPARPAERSRLCYRKKTVKRVYGGVL 119
+KL +P RP ++ R KT+K YG VL
Sbjct: 584 TKLLAKKPRRPIKKRVKTQRTKTIKLHYGDVL 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,114,468
Number of Sequences: 27780
Number of extensions: 192725
Number of successful extensions: 503
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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