Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g03r
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    30   0.38 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.7  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        27   3.5  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   4.7  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   4.7  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    26   6.1  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    25   8.1  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   8.1  

>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -1

Query: 580 SQEPSYVCL--HLILS*TMSTRAAGIFREEKTS*KFVAP*KVSTPPASAPSNWIASPTTY 407
           S EP Y+CL  H  L    S R++   R+ +   +F+AP  ++T   +  S W+ S   +
Sbjct: 263 SFEPLYICLQVHSYLGLLSSFRSS-FERDRRRQQEFLAPKSLTTLDMAVVSEWLNSIAGF 321

Query: 406 SLVNF 392
            +V +
Sbjct: 322 MIVEY 326


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 400  PVNKL*EMLSNSKVLKPAALTPSTEPRTFRMFSPPGRCQPPAYSLFTIGSNGDKRNWA 573
            PVN     L+ +   +P+   P+        F+P  + QPPA S     S  D  NW+
Sbjct: 1594 PVNNSGSPLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQ-PSGHDSDNWS 1650


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 195 NRQLKFDVPDGVSVNTDSDNSTSANAHV 278
           +RQ+KF   D +S++   DN TSA+  V
Sbjct: 339 SRQVKFSPADVISLSGCKDNQTSADTSV 366


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 143 GRISDFLNKLPYNLEKYQSQVSRVLEYVSEY 51
           G +    ++ P  L K   Q+S  LEY SEY
Sbjct: 148 GDVETIASQSPLELSKLVEQISGSLEYKSEY 178


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 225 GVSVNTDSDNSTSANAHVGHGDSSRSVCG 311
           G  V     NS+  N H  HG   R+VCG
Sbjct: 539 GTLVPPTKQNSSPKNGHGIHGSFLRTVCG 567


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = -3

Query: 533 NEYAGGWHLPGGENILKVRGSVEGVNAAGFSTFE---LDSISYNLFTGQLHLSLSLNSVA 363
           ++YA   H   G  +   R   +G   AG+  +    LD+I  N+ T Q+  S     + 
Sbjct: 631 SQYARS-HQLNGITLSGDRSDKKGALTAGYRDYRNSRLDAIK-NVKTYQIKFS----DLQ 684

Query: 362 ASIDAAEGEVQIFDRKLTA 306
            S++    E++ FD+K+TA
Sbjct: 685 ESLEKCRSEIESFDQKITA 703


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 236 DGYTVRNVELELSIGEINSEIQLNLFGREVGGRISDFL 123
           D Y   NV   LS+G++  +++L       G R+SD L
Sbjct: 300 DTYQRTNVPTVLSLGDVCGKLELTPVAIAAGRRLSDRL 337


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +3

Query: 153 TPEQVQLDFRVDFSNRQLKFDVPDGVSVN----TDSDNSTSANAHVGHGDSSRSVCGQ 314
           T E + L+    FS+  ++ D  D  S +    +DSD   S + H  HG  + + C Q
Sbjct: 335 TGEALALENYDGFSDLDVEEDEDDVESSSNEEVSDSDEEDSDSKHTAHGQQNAAECRQ 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,497
Number of Sequences: 5004
Number of extensions: 46154
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)