BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10g03r (715 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g25360.1 68417.m03649 expressed protein 34 0.11 At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 29 2.3 At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 29 2.3 At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa s... 29 3.1 At5g53380.1 68418.m06633 hypothetical protein 28 5.3 At3g12440.1 68416.m01549 extensin family protein contains simila... 28 5.3 At3g17950.1 68416.m02285 expressed protein ; expression supporte... 28 7.1 At5g45730.1 68418.m05622 DC1 domain-containing protein contains ... 27 9.3 At4g31570.1 68417.m04483 expressed protein 27 9.3 At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containi... 27 9.3 >At4g25360.1 68417.m03649 expressed protein Length = 533 Score = 33.9 bits (74), Expect = 0.11 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = -3 Query: 398 QLHLSLSLNSVAASIDAAEGEVQIFDRKLTADASGGIAV 282 Q+H+ LSL++ +I ++ FD+ LT+D+S G+ V Sbjct: 63 QVHVPLSLSNHTVNILQKSSDINAFDKNLTSDSSSGLPV 101 >At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc transporter ZAT [Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563 Length = 398 Score = 29.5 bits (63), Expect = 2.3 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Frame = +3 Query: 225 GVSVNTDSDNSTSANAHV-GHGDSSRSVCGQFTVENLDFSFSSVY*GRNRIQAQGQVKLT 401 GV+V T + + H GHG+ G T + LD S + V + + + ++ Sbjct: 204 GVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLLDKSKTQVA-AKEKRKRNINLQGA 262 Query: 402 SE*VVGDAIQFEGAEAGGVDTFY 470 V+GD+IQ G GG +Y Sbjct: 263 YLHVLGDSIQSVGVMIGGAIIWY 285 >At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc transporter ZAT [Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563 Length = 398 Score = 29.5 bits (63), Expect = 2.3 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Frame = +3 Query: 225 GVSVNTDSDNSTSANAHV-GHGDSSRSVCGQFTVENLDFSFSSVY*GRNRIQAQGQVKLT 401 GV+V T + + H GHG+ G T + LD S + V + + + ++ Sbjct: 204 GVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLLDKSKTQVA-AKEKRKRNINLQGA 262 Query: 402 SE*VVGDAIQFEGAEAGGVDTFY 470 V+GD+IQ G GG +Y Sbjct: 263 YLHVLGDSIQSVGVMIGGAIIWY 285 >At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial identical to NADH-ubiquinone oxidoreductase 20 kDa subunit mitochondrial [precursor] SP:Q42577 from [Arabidopsis thaliana]; contains Pfam profile: PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Length = 218 Score = 29.1 bits (62), Expect = 3.1 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Frame = +1 Query: 454 ALTPSTEPRTFRMFSPPGRCQPP----AYSLFTIGSNGDKRNWA 573 AL+PST P ++ PP PP + F I D NWA Sbjct: 36 ALSPSTSPTSYTRPGPPSTSPPPPGLSKAAEFVISKVDDLMNWA 79 >At5g53380.1 68418.m06633 hypothetical protein Length = 483 Score = 28.3 bits (60), Expect = 5.3 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -3 Query: 635 DVDLAESQRIVDGIIENWISRAQLRLSPFD 546 D+DL E + DG +++++SR L LSP D Sbjct: 88 DIDLQEINKDGDGFVDDYVSR--LTLSPLD 115 >At3g12440.1 68416.m01549 extensin family protein contains similarity to Swiss-Prot:Q38913 extensin 1 precursor (AtExt1) (AtExt4) [Arabidopsis thaliana] Length = 353 Score = 28.3 bits (60), Expect = 5.3 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +1 Query: 439 VLKPAALTPSTEPRTFRMFSPPGRCQPPAYSL 534 V PA + P +R SPP R PPA +L Sbjct: 188 VSPPARYLSVSPPARYRSVSPPARSDPPANTL 219 >At3g17950.1 68416.m02285 expressed protein ; expression supported by MPSS Length = 211 Score = 27.9 bits (59), Expect = 7.1 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +3 Query: 243 DSDNSTSANAHVGHGDSSRSVCGQFTVENLDFSFSSVY 356 D D++ H G GDS RS G++ F +VY Sbjct: 105 DDDDAAGNGIHRGTGDSKRSSLGEYLEVERRFGDEAVY 142 >At5g45730.1 68418.m05622 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 519 Score = 27.5 bits (58), Expect = 9.3 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +3 Query: 186 DFSNRQLKFDVPDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQ 314 DF + ++P +++N D+ S H+GHGD VC Q Sbjct: 163 DFMLHKGCINLPRVININRH-DHKISRTYHLGHGDWECGVCRQ 204 >At4g31570.1 68417.m04483 expressed protein Length = 2712 Score = 27.5 bits (58), Expect = 9.3 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = -3 Query: 170 LNLFGREVGGRISDFLNKLPYNLEKYQSQVSRVLEYVSEYI 48 +NL GG I++ L NL+++ VS + E VS+++ Sbjct: 2131 INLHETSSGGNIAEICGSLSQNLDQFVVGVSHLEEKVSKHL 2171 >At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 575 Score = 27.5 bits (58), Expect = 9.3 Identities = 9/37 (24%), Positives = 22/37 (59%) Frame = -2 Query: 144 RTHQRLLEQAPLQLRKIPIPGQPGFGVRLRIHHQQTS 34 R +R+ E +++ ++ +PG +R ++HH ++S Sbjct: 422 RVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSS 458 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,349,895 Number of Sequences: 28952 Number of extensions: 249054 Number of successful extensions: 881 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 834 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 881 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1545769616 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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