Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g03f
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    30   0.32 
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   1.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.2  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        27   3.0  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   3.9  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   3.9  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    26   5.2  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    25   6.8  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   6.8  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    25   9.0  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   9.0  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   9.0  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    25   9.0  

>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 151 SQEPSYVCL--HLILS*TMSTRAAGIFREEKTS*KFVAP*KVSTPPASAPSNWIASPTTY 324
           S EP Y+CL  H  L    S R++   R+ +   +F+AP  ++T   +  S W+ S   +
Sbjct: 263 SFEPLYICLQVHSYLGLLSSFRSS-FERDRRRQQEFLAPKSLTTLDMAVVSEWLNSIAGF 321

Query: 325 SLVNF 339
            +V +
Sbjct: 322 MIVEY 326


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -2

Query: 620 GELVQEVADASSDLTPEQVQLDFRVDFSNRQLKFDVPDGVSVNTDSDNSTSAN 462
           GE+V+EV   +S  T E   LDF     N     D+P    V TD D    A+
Sbjct: 109 GEIVEEVPFGAS--TSEASLLDFVETHLNPDTDPDIPSDEDVLTDEDTEEVAS 159


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -3

Query: 331  PVNKL*EMLSNSKVLKPAALTPSTEPRTFRMFSPPGRCQPPAYSLFTIGSNGDKRNWA 158
            PVN     L+ +   +P+   P+        F+P  + QPPA S     S  D  NW+
Sbjct: 1594 PVNNSGSPLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQ-PSGHDSDNWS 1650


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 536 NRQLKFDVPDGVSVNTDSDNSTSANAHV 453
           +RQ+KF   D +S++   DN TSA+  V
Sbjct: 339 SRQVKFSPADVISLSGCKDNQTSADTSV 366


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 506 GVSVNTDSDNSTSANAHVGHGDSSRSVCG 420
           G  V     NS+  N H  HG   R+VCG
Sbjct: 539 GTLVPPTKQNSSPKNGHGIHGSFLRTVCG 567


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 620 GELVQEVADASSDLTPEQVQLDFRVDFSN 534
           GEL+    +A S+LTP  +Q   R+DF N
Sbjct: 158 GELIGPTRNAHSNLTPTVIQ---RIDFEN 183


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 198 NEYAGGWHLPGGENILKVRGSVEGVNAAGFSTFE---LDSISYNLFTGQLHLSLSLNSVA 368
           ++YA   H   G  +   R   +G   AG+  +    LD+I  N+ T Q+  S     + 
Sbjct: 631 SQYARS-HQLNGITLSGDRSDKKGALTAGYRDYRNSRLDAIK-NVKTYQIKFS----DLQ 684

Query: 369 ASIDAAEGEVQIFDRKLTA 425
            S++    E++ FD+K+TA
Sbjct: 685 ESLEKCRSEIESFDQKITA 703


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 495 DGYTVRNVELELSIGEINSEIQLNLFGREVGGRISDFL 608
           D Y   NV   LS+G++  +++L       G R+SD L
Sbjct: 300 DTYQRTNVPTVLSLGDVCGKLELTPVAIAAGRRLSDRL 337


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -2

Query: 578 TPEQVQLDFRVDFSNRQLKFDVPDGVSVN----TDSDNSTSANAHVGHGDSSRSVCGQ 417
           T E + L+    FS+  ++ D  D  S +    +DSD   S + H  HG  + + C Q
Sbjct: 335 TGEALALENYDGFSDLDVEEDEDDVESSSNEEVSDSDEEDSDSKHTAHGQQNAAECRQ 392


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 605 EVADASSDLTPEQVQLDFRVDFSNRQLKFDVPDGV 501
           E+ + S   TP+ +  D   D  NR+  FD P+G+
Sbjct: 84  EIEERSIRSTPKSIGDD---DLENREGSFDAPEGI 115


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 283 PAALTPSTEPRTFRMFSPPGRCQPPAY 203
           PAA   S+EPRTF  F       PP +
Sbjct: 185 PAASPASSEPRTFSSFEDQYGRLPPGW 211


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 75   VAAVPYGDVDLAESQRIVDGIIEN 146
            VAA PY DVD+  +   +  IIEN
Sbjct: 1106 VAAPPYNDVDVYTNDVALIAIIEN 1129


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 81  AVPYGDVDLAESQRIVDGIIENWISRAQLRLSPFDPIVNN 200
           A  Y DV L +   ++  IIEN +  AQ ++  F P++ +
Sbjct: 556 ATMYADV-LQDEVDLLKSIIENQVLDAQNKVDEFTPVLES 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,778
Number of Sequences: 5004
Number of extensions: 38847
Number of successful extensions: 155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)