Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10g03f
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)                    30   1.8  
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         29   4.1  
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)             29   4.1  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_55538| Best HMM Match : zf-BED (HMM E-Value=1.4)                    27   9.5  

>SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)
          Length = 510

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 575 PEQVQLDFRVDFSNRQLK--FDVPDGVSVNTDSDNSTSANAHVGHGDSSR 432
           P+   +  +VD +NR  K  F+ P      T+SD+ T   A +GH  S+R
Sbjct: 344 PQGKPIKIKVDMNNRLGKGEFESPVPPCSPTESDDGTQGVAEIGHTGSAR 393


>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 554 FRVDFSNRQLKFDVPDGVS-VNTDSDNSTSANAHVGHGDSSRSVCG 420
           FRV F+N++   +  DG S V+++S++ + A +  G G+      G
Sbjct: 370 FRVPFNNQETSDEESDGSSEVSSESESGSDAESEEGEGEGEEVSSG 415


>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 285 FSTFELDSISYNLFTGQ--LHLSLSLNSVAASIDAAEGEVQIFDRKLTAD 428
           FS  +L   SY+L TG+  LHLS   + V  S   + G +QI   KL  D
Sbjct: 304 FSKHDLLETSYHLRTGRIDLHLSDDSSEVTPSDPLSGGAMQIRINKLATD 353


>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
          Length = 521

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -2

Query: 584 DLTPEQVQLDFRVDFSNRQLKFDVPDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQFTVE 405
           +LT +    D     ++    F+  +  S N++SDNSTS N+   + +S  S     T +
Sbjct: 358 NLTSDNPNTDNSGSDNSSSGNFNSDNSTSDNSNSDNSTSDNSSSDNSNSDNSYTDNSTSD 417

Query: 404 N 402
           N
Sbjct: 418 N 418


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 528  LSIGEINSEIQLNLFGREVGG 590
            LSI   N +I+L+L GR+VGG
Sbjct: 1101 LSINPTNGQIELSLKGRDVGG 1121


>SB_55538| Best HMM Match : zf-BED (HMM E-Value=1.4)
          Length = 1108

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 309 ISYNLFTGQLHLSLSLNSVAASIDAAEG 392
           + Y  F+G LH +L +    AS+DA +G
Sbjct: 721 VQYMQFSGSLHANLYMEVEVASVDAFQG 748


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,993
Number of Sequences: 59808
Number of extensions: 288998
Number of successful extensions: 902
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)