Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g03f
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25360.1 68417.m03649 expressed protein 34 0.089
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 29 1.9
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 29 1.9
At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa s... 29 2.5
At5g53380.1 68418.m06633 hypothetical protein 28 4.4
At3g12440.1 68416.m01549 extensin family protein contains simila... 28 4.4
At3g17950.1 68416.m02285 expressed protein ; expression supporte... 28 5.9
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ... 27 7.8
At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil... 27 7.8
>At4g25360.1 68417.m03649 expressed protein
Length = 533
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 333 QLHLSLSLNSVAASIDAAEGEVQIFDRKLTADASGGIAV 449
Q+H+ LSL++ +I ++ FD+ LT+D+S G+ V
Sbjct: 63 QVHVPLSLSNHTVNILQKSSDINAFDKNLTSDSSSGLPV 101
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -2
Query: 506 GVSVNTDSDNSTSANAHV-GHGDSSRSVCGQFTVENLDFSFSSVY*GRNRIQAQGQVKLT 330
GV+V T + + H GHG+ G T + LD S + V + + + ++
Sbjct: 204 GVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLLDKSKTQVA-AKEKRKRNINLQGA 262
Query: 329 SE*VVGDAIQFEGAEAGGVDTFY 261
V+GD+IQ G GG +Y
Sbjct: 263 YLHVLGDSIQSVGVMIGGAIIWY 285
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -2
Query: 506 GVSVNTDSDNSTSANAHV-GHGDSSRSVCGQFTVENLDFSFSSVY*GRNRIQAQGQVKLT 330
GV+V T + + H GHG+ G T + LD S + V + + + ++
Sbjct: 204 GVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLLDKSKTQVA-AKEKRKRNINLQGA 262
Query: 329 SE*VVGDAIQFEGAEAGGVDTFY 261
V+GD+IQ G GG +Y
Sbjct: 263 YLHVLGDSIQSVGVMIGGAIIWY 285
>At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa
subunit, mitochondrial identical to NADH-ubiquinone
oxidoreductase 20 kDa subunit mitochondrial [precursor]
SP:Q42577 from [Arabidopsis thaliana]; contains Pfam
profile: PF01058 NADH ubiquinone oxidoreductase, 20 Kd
subunit
Length = 218
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = -3
Query: 277 ALTPSTEPRTFRMFSPPGRCQPP----AYSLFTIGSNGDKRNWA 158
AL+PST P ++ PP PP + F I D NWA
Sbjct: 36 ALSPSTSPTSYTRPGPPSTSPPPPGLSKAAEFVISKVDDLMNWA 79
>At5g53380.1 68418.m06633 hypothetical protein
Length = 483
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 96 DVDLAESQRIVDGIIENWISRAQLRLSPFD 185
D+DL E + DG +++++SR L LSP D
Sbjct: 88 DIDLQEINKDGDGFVDDYVSR--LTLSPLD 115
>At3g12440.1 68416.m01549 extensin family protein contains
similarity to Swiss-Prot:Q38913 extensin 1 precursor
(AtExt1) (AtExt4) [Arabidopsis thaliana]
Length = 353
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 292 VLKPAALTPSTEPRTFRMFSPPGRCQPPAYSL 197
V PA + P +R SPP R PPA +L
Sbjct: 188 VSPPARYLSVSPPARYRSVSPPARSDPPANTL 219
>At3g17950.1 68416.m02285 expressed protein ; expression supported
by MPSS
Length = 211
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 488 DSDNSTSANAHVGHGDSSRSVCGQFTVENLDFSFSSVY 375
D D++ H G GDS RS G++ F +VY
Sbjct: 105 DDDDAAGNGIHRGTGDSKRSSLGEYLEVERRFGDEAVY 142
>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 519
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 545 DFSNRQLKFDVPDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQ 417
DF + ++P +++N D+ S H+GHGD VC Q
Sbjct: 163 DFMLHKGCINLPRVININRH-DHKISRTYHLGHGDWECGVCRQ 204
>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
protein contains Pfam profile: PF04981 NMD3 family
Length = 516
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = -2
Query: 614 LVQEVADASSDLTPEQVQLDFRVDFSNRQLKFDVPDGVSVNTDSDNSTSANAHVGHGDSS 435
L E+ D+ + PE+ ++ + + ++ +S+ D D S A + G+ +
Sbjct: 427 LPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYRDKDYQASETASMTDGEGA 486
Query: 434 RSVCGQFTVENLDFSF 387
SV + + +LD SF
Sbjct: 487 PSVPIEELLADLDLSF 502
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,640
Number of Sequences: 28952
Number of extensions: 211750
Number of successful extensions: 795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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