Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10g02f
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 29 0.43
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 1.7
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.3
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 4.0
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 4.0
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 5.2
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 9.1
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 9.1
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 9.1
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.43
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 204 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 335
P+ T +L ++IL T+ SL + VSP Y +FT LL
Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 99 RSLAVQLQTAASTATAKVRTETIVPIESN 13
R L + + A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -2
Query: 607 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 428
S+D I L+ F H+E + +Y L E+ +N GYYD D S
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627
Query: 427 L 425
L
Sbjct: 628 L 628
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 180 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNS 350
N L+ F T T LLP++ I ++TV LSL + S V+ L+F +L +
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349
Query: 351 LRRITTRM 374
+ +T ++
Sbjct: 350 VNELTLKL 357
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 325 VNIRYFTGLTATGRSSDNATVCRIVEFSME 236
+N+ Y + L+ATG S + TV I E + E
Sbjct: 94 INVEYQSNLSATGESVNTTTVSAINEDTRE 123
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 1 DQISIRLDRNNGFRSHLSRSCAR 69
D +S R DR++ FRSH S R
Sbjct: 41 DDVSSRRDRHDSFRSHESNKIRR 63
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 214 LPFNCYLFPWRILRSCIPSHYRWIFP 291
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 401 WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 306
W +LLV + C NS +R+G Q +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 525 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 418
PSD T VP + S PW TTP P W+
Sbjct: 21 PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 25.0 bits (52), Expect = 9.1
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = -2
Query: 514 TAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM-CYSYDAHIL-VVILLREFG 341
T + G P K GYY+T+ S +D G+ + + I + +L R +
Sbjct: 1118 TFGIGGKDPETGEVKPGFGYYETICGGSGAIDGLDGTSGVHTHMTNTRITDLEVLERRYP 1177
Query: 340 MVNSKVNIRYFTGLTATGRSSDNATVCRIVEF 245
++ K IR +G G+ V R +EF
Sbjct: 1178 VILRKFIIRENSG--GAGKYKGGDGVIRDIEF 1207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,755
Number of Sequences: 5004
Number of extensions: 60211
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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