Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f24r
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 29 0.48
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 1.9
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 2.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.5
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 4.4
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 4.4
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 7.8
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 7.8
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 7.8
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 7.8
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 29.5 bits (63), Expect = 0.48
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -2
Query: 285 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 106
A E +A S L N+ + AAIT K + + F +E G V E+I
Sbjct: 74 AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130
Query: 105 LTDYAAE-VSRVLEYVAQLV 49
+ DY AE S++LE QL+
Sbjct: 131 VGDYVAENKSKILEQRYQLL 150
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +1
Query: 241 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 354
EG LSND L+ S + P D + ENAD+SFS D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -2
Query: 207 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 91
AITIGD + L + +++GP V +F + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRP 56
PP S+ S S +P + P +P L QP + V+ P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 214 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 333
+ DN ++ SGS + D + + G+E+ +D EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 4.4
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +1
Query: 4 FDSRYRSSNLQ*SVDDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDL--E 177
F++ +N + + +DEL +VL + V+ ++D + L E D A +
Sbjct: 465 FENSEFLNNEEENDEDELSNVLVSIPSRTSVLERLDTNPLNESTDAVVGCAQLYYPSLGK 524
Query: 178 VRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGS 300
+ + ++ ++ D+D+ G SLSN++ KS G+
Sbjct: 525 ILISLTRNWQTTVFDDSDLATMGVNKESLSNEMDYSKSLGT 565
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 7.8
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = -2
Query: 327 IFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREV 148
++S VL+ A L+ V+A A S D VS + A+ D+ S L I L + V
Sbjct: 952 LWSEVLQDSAYRRPLLDQVIATAVPESS--DPEAVSIVVKALMEVDLPSQL-IELLEKIV 1008
Query: 147 ----GPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQL 52
+ N L+ + ++LT A+ SRV+EY+ +L
Sbjct: 1009 LQPSSFSENANLQNL-LFLTAIKADKSRVMEYIDKL 1043
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 348
G GSG L ND L+ K S P +NA S G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 7.8
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +1
Query: 232 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 399
VV E D +LS LK ++G +AEN S T NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 532 ERISRSQQFTDFIEQV*DHDVKDA 603
E +SR QQF D + + ++KDA
Sbjct: 63 EEVSRRQQFVDKLRTILSTEIKDA 86
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 165 LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 43
+ R++GP V F+ K+P L + ++ + + V +LV+N
Sbjct: 972 IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,502
Number of Sequences: 5004
Number of extensions: 46543
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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