Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f24r
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 37 0.018
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) 31 1.2
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.7
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 29 2.7
SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.7
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.7
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 2.7
SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 3.5
SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 29 3.5
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 3.5
SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 3.5
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 29 3.5
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 29 3.5
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05) 29 3.5
SB_14604| Best HMM Match : PT (HMM E-Value=5.1) 29 3.5
SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32) 29 3.5
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 28 6.2
SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 8.1
SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 8.1
SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 8.1
SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 8.1
SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5) 28 8.1
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 36.7 bits (81), Expect = 0.018
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 214 DVTDNDVVCEGDGSGSLS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 390
DV+D D V +GD G+ + +DV G S G + +++ D S +G + N N D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224
Query: 391 ESGADVADTTQMQGAEVISLDVSHAAREVNDV 486
+ A+ D GA DVS+ A + +DV
Sbjct: 225 SNVANDGDDVS-NGAN-DGDDVSNGANDCDDV 254
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 30.7 bits (66), Expect = 1.2
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Frame = -2
Query: 453 VKADDFSSLHLRRVSYVGTRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFAS 295
V D ++ ++ R+S TRL N+ + VS + GS++ GE R+ F+R +SF+
Sbjct: 372 VTVDSGATGNMIRLS-TATRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSF 430
Query: 294 GGLALENVVAEATASVSLAD--NIIVSDIGAAITIGD 190
GL +EN+ E A + +I V I +GD
Sbjct: 431 EGLVVENLDVEVLAGTPFMEKNDIAVRPAKGQIILGD 467
>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
Length = 1410
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/112 (24%), Positives = 50/112 (44%)
Frame = +2
Query: 71 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 250
+T+ +S + ++ +G+ SR + +GP R + R P +A P L A+ T
Sbjct: 243 KTQKSSVSQTMPVSGVHSRPVFDSGPGHRSLK---RFASEGPATMALP--LPDYGDAQTT 297
Query: 251 EAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT 406
+A+ S S PE+ + + + +A P+D+ + T T PT
Sbjct: 298 NEIAANGETSGPSEPESSNKSSEPDSTPATNAPPSDSPSTTTPTTPQPPTPT 349
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -2
Query: 399 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 241
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 331 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 390
Query: 240 AD--NIIVSDIGAAITIGD 190
+ +I V I +GD
Sbjct: 391 MEKNDIAVRPAKGQIILGD 409
>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 230
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -2
Query: 399 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 241
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 87 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 146
Query: 240 AD--NIIVSDIGAAITIGD 190
+ +I V I +GD
Sbjct: 147 MEKNDIAVRPAKGQIILGD 165
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -2
Query: 399 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 241
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 343 TRLGCNITTSSQSVSQADGSSQLHVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 402
Query: 240 AD--NIIVSDIGAAITIGD 190
+ +I V I +GD
Sbjct: 403 MEKNDIAVRPAKGQIILGD 421
>SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -2
Query: 297 SGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQIN 166
SGG L A+A +VSL+D+ S A I++ D++ +LQ++
Sbjct: 665 SGGRTLVQAAADAALAVSLSDH--CSQPSAPISLYDLRDSLQVH 706
>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -2
Query: 399 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 241
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 8 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 67
Query: 240 --ADNIIVSDIGAAITIGD 190
++I V I +GD
Sbjct: 68 METNDIAVRPAKGQIILGD 86
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +1
Query: 55 LGDVLQNTADLGCVVRQVDRDLL*EVVDGW-SNFASEEIDLEVRFDIANSYCSSDVTDND 231
L D+L+N + V D D+ ++ G S + E D+ + +S+ + TD D
Sbjct: 654 LADLLKNASARMDDVSSGDNDIPDDLTGGAVSQGSGGEDDI-----LVDSHTPKEFTDTD 708
Query: 232 V-VCEGDGSGSLSNDVLKGKSSGSERPQDAA 321
+ +G+GSGS N + G +GS +++A
Sbjct: 709 AKLLQGEGSGSQHNVMRGGSGAGSGNLKESA 739
>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 577
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -2
Query: 399 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 241
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 342 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 401
Query: 240 AD--NIIVSDIGAAITIGD 190
+ +I V I +GD
Sbjct: 402 MEKNDIAVRPAKGQIILGD 420
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -2
Query: 615 PNSQRILDIVISN--LFNEIGELLRAADPLRRDGY 517
P SQRIL +++ LFN+ L AA+ L R GY
Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192
>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 382
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -2
Query: 399 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 241
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 298
Query: 240 AD--NIIVSDIGAAITIGD 190
+ +I V I +GD
Sbjct: 299 MEKNDIAVRPAKGQIILGD 317
>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1212
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -2
Query: 399 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 241
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 352 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 411
Query: 240 AD--NIIVSDIGAAITIGD 190
+ +I V I +GD
Sbjct: 412 MEKNDIAVRPAKGQIILGD 430
>SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 100
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 32 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 88
>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 287
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 219 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 275
>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 191 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 247
>SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 214
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 146 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 202
>SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 172 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 228
>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 594 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 650
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 1145 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 1201
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 1201 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 1257
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 1204 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 1260
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 607 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 663
>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
Length = 848
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 780 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 836
>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
Length = 344
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +2
Query: 296 EAKDLRTRLKMRISPSAEPTD-AETLGTARTKLSRVPT*LTRRK----CRELKSSALTSV 460
+A LRT+ K + PS P D A TLGT + R T T+ + + A T
Sbjct: 141 QATTLRTKPKPSV-PSHNPGDQATTLGTNKNPRDRAKTLGTKPQPWGPSHNPQDQAKTLG 199
Query: 461 TRPEKLMMSDAPGGLQEPA*PSR 529
T+P+ S P Q+P+ PS+
Sbjct: 200 TKPQPWGPSHNPRDQQKPSGPSQ 222
>SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
Length = 500
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 432 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 488
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 28.3 bits (60), Expect = 6.2
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +2
Query: 191 SPIVIA-APMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 367
+P +A AP++ T+ +A + + +++T S PEAK A+ T ET
Sbjct: 146 APAAVAPAPVTTTIPQAATASPSTQASSTAQEDSKPEAK----------PDEAKSTSTET 195
Query: 368 LGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLM 481
+A T S P T R E SAL + T E L+
Sbjct: 196 AASATTTAS-TPAASTPRSYIEEAESALATGTEYEGLV 232
>SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP RRPTR + Y +T N
Sbjct: 172 PPAEPVAETPPTTQANNDPVPSCMPDASSQAPQPPHEPRRPTRARTRPKRYEPETGN 228
>SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = -1
Query: 178 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
PP + + T++ C+PD QP +RPTR + Y +T N
Sbjct: 172 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPKRPTRARTRPKRYEPETGN 228
>SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 688
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 109 LPDGLRSRGQPCSG--VRRPTRHQQITVNYSNDTWN 8
+PD L +GQPC G P Q+TV+Y T++
Sbjct: 342 VPDKLYIKGQPCLGKITSLPNTVGQLTVHYYTGTYD 377
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +2
Query: 242 RETEAVASATTFSRASP--PEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 415
++T++ +S T R P P + D +++L A PT + ++ T +S T ++
Sbjct: 983 QQTKSPSSYPTVIRPKPSLPYSHDFKSKLSSPYHSEARPTSSSSVQTGEKTISSHITGVS 1042
Query: 416 RRKCRELKSSALTSVTRPEKLMMSD 490
+ + ++ ++ T P + D
Sbjct: 1043 TAQITSMSTTTESTTTHPVRRTSRD 1067
>SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 269
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 112 CLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTWN 8
C+PD QP RRPTR + Y +T N
Sbjct: 223 CMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGN 257
>SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)
Length = 207
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 390 NLVLAVPRVSASVG-SAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDI 214
N+ + R +AS G + EIR+ + + GGLAL + AT L ++VS +
Sbjct: 12 NISASRNRHTASFGHGGDKEIRVQYAEIVAAVLGGLALAWIADLATGRRGLGATVLVSGV 71
Query: 213 GAA 205
G A
Sbjct: 72 GLA 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,602,590
Number of Sequences: 59808
Number of extensions: 398086
Number of successful extensions: 1308
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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